Browse Element(s) Details


OsAffx.14040.1.S1_at

Description tigr:9632.m02849
TID=OsAffx.14040.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3007011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30040OsAffx.14039.1.S1_s_at11/114+17742051..17753089Jacalin-like lectin domain containing protein, expressed
LOC_Os04g30050OsAffx.26245.1.S1_at11/114+17756474..17756988expressed protein
LOC_Os04g30060OsAffx.3948.1.S1_at11/114+17757377..17758414Protein kinase domain containing protein
LOC_Os04g30070OsAffx.14040.1.S1_at11/114+17759569..17759910hypothetical protein
LOC_Os04g30080OsAffx.20733.1.S1_x_at1/114+17763661..17763891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g30090NANA4+17768135..17769452expressed protein
LOC_Os04g30100NANA4+17772449..17773222transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g30110OsAffx.3949.1.S1_at11/114+17774477..17775280wall-associated kinase 3, putative
LOC_Os04g30120OsAffx.16467.1.S1_at9/114+17776629..17778057hypothetical protein
LOC_Os04g30120Os.26886.2.S1_s_at7/114+17776629..17778057hypothetical protein
LOC_Os04g30120Os.26886.6.S1_s_at6/114+17776629..17778057hypothetical protein
LOC_Os04g30120OsAffx.3425.1.S1_at1/114+17776629..17778057hypothetical protein
LOC_Os04g30130OsAffx.8356.1.S1_x_at2/114+17783882..17789827hypothetical protein
LOC_Os04g30130Os.27088.1.A1_x_at1/114+17783882..17789827hypothetical protein
LOC_Os04g30130OsAffx.14762.1.S1_at1/114+17783882..17789827hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14040.1.S1_at--505--3391Chr04:17759638..17759662 (25 bp)
CAGCGGCAACGAGCACATCGGCGGA
LOC_Os04g30070
OsAffx.14040.1.S1_at--949--5151Chr04:17759643..17759667 (25 bp)
GCAACGAGCACATCGGCGGATCCAG
LOC_Os04g30070
OsAffx.14040.1.S1_at--709--7491Chr04:17759691..17759715 (25 bp)
GTGGTTCCGGCTACAGCAGTGCAGA
LOC_Os04g30070
OsAffx.14040.1.S1_at--885--10651Chr04:17759695..17759719 (25 bp)
TTCCGGCTACAGCAGTGCAGATCCA
LOC_Os04g30070
OsAffx.14040.1.S1_at--650--8311Chr04:17759699..17759723 (25 bp)
GGCTACAGCAGTGCAGATCCAGCGC
LOC_Os04g30070
OsAffx.14040.1.S1_at--730--5031Chr04:17759711..17759735 (25 bp)
GCAGATCCAGCGCAGTTGTGGGCGT
LOC_Os04g30070
OsAffx.14040.1.S1_at--986--3431Chr04:17759723..17759747 (25 bp)
CAGTTGTGGGCGTGGATCCTGCACA
LOC_Os04g30070
OsAffx.14040.1.S1_at--257--8571Chr04:17759735..17759759 (25 bp)
TGGATCCTGCACAGGTGACGACGGC
LOC_Os04g30070
OsAffx.14040.1.S1_at--60--1391Chr04:17759772..17759796 (25 bp)
AGACGGCGGAGGATCCGTCCGCTGC
LOC_Os04g30070
OsAffx.14040.1.S1_at--715--1831Chr04:17759806..17759830 (25 bp)
ACGCGTACGGTGTCAACCTTCGCGG
LOC_Os04g30070
OsAffx.14040.1.S1_at--91--1931Chr04:17759812..17759836 (25 bp)
ACGGTGTCAACCTTCGCGGCGGTGA
LOC_Os04g30070
Target Sequence 
CAGCGGCAACGAGCACATCGGCGGATCCAGCCGCCACTCCGCGTCCCACGCGCGTGGTTCCGGCTACAGCAGTGCAGATC
CAGCGCAGTTGTGGGCGTGGATCCTGCACAGGTGACGACGGCGGGCTGCAAGCGAGACGGCGGAGGATCCGTCCGCTGCT
CCGCCACCACGCGTACGGTGTCAACCTTCGCGGCGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14040.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis