Browse Element(s) Details


OsAffx.14039.1.S1_s_at

Description tigr:9632.m02846
TID=OsAffx.14039.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Jacalin-like lectin domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3004011/11Jacalin-like lectin domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30000OsAffx.26244.1.S1_at10/114+17716533..17717106hypothetical protein
LOC_Os04g30010Os.19575.1.A1_at11/114+17718708..17722411Calcium binding EGF domain containing protein, expressed
LOC_Os04g30010Os.19575.2.S1_at10/114+17718708..17722411Calcium binding EGF domain containing protein, expressed
LOC_Os04g30020OsAffx.14038.1.S1_at11/114+17725145..17725522hypothetical protein
LOC_Os04g30030Os.50127.1.S1_at4/114+17726046..17729387Protein kinase domain containing protein
LOC_Os04g30040OsAffx.14039.1.S1_s_at11/114+17742051..17753089Jacalin-like lectin domain containing protein, expressed
LOC_Os04g30050OsAffx.26245.1.S1_at11/114+17756474..17756988expressed protein
LOC_Os04g30060OsAffx.3948.1.S1_at11/114+17757377..17758414Protein kinase domain containing protein
LOC_Os04g30070OsAffx.14040.1.S1_at11/114+17759569..17759910hypothetical protein
LOC_Os04g30080OsAffx.20733.1.S1_x_at1/114+17763661..17763891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g30090NANA4+17768135..17769452expressed protein
LOC_Os04g30100NANA4+17772449..17773222transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g30110OsAffx.3949.1.S1_at11/114+17774477..17775280wall-associated kinase 3, putative
LOC_Os04g30120OsAffx.16467.1.S1_at9/114+17776629..17778057hypothetical protein
LOC_Os04g30120Os.26886.2.S1_s_at7/114+17776629..17778057hypothetical protein
LOC_Os04g30120Os.26886.6.S1_s_at6/114+17776629..17778057hypothetical protein
LOC_Os04g30120OsAffx.3425.1.S1_at1/114+17776629..17778057hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14039.1.S1_s_at--436--6931Chr04:17752252..17752276 (25 bp)
GTAGTGGTGACGTCATCGATTCTAT
LOC_Os04g30040
OsAffx.14039.1.S1_s_at--421--51Chr04:17752275..17752299 (25 bp)
ATTGAGTTCTCATATGCCGACCATG
LOC_Os04g30040
OsAffx.14039.1.S1_s_at--1001--8851Chr04:17752604..17752628 (25 bp)
TGATGCCTCTGGAATCACTTCAGGG
LOC_Os04g30040
OsAffx.14039.1.S1_s_at--411--2591Chr04:17752638..17752662 (25 bp)
AACGTTCGGTCCCTTGGATGCAGCG
LOC_Os04g30040
OsAffx.14039.1.S1_s_at--35--3031Chr04:17752709..17752733 (25 bp)
AATGCCTCAGCTACGGGCCGTTTGG
LOC_Os04g30040
OsAffx.14039.1.S1_s_at--61--1931Chr04:17752784..17752808 (25 bp)
ACGGGTGCATTGTCGGCTTCTTCGC
LOC_Os04g30040
OsAffx.14039.1.S1_s_at--365--2531Chr04:17752862..17752886 (25 bp)
AACTTTACTAGCTCTTGTCCTCTGT
LOC_Os04g30040
OsAffx.14039.1.S1_s_at--234--10651Chr04:17752894..17752918 (25 bp)
TTCGCTGTTGTTGTATCCTGCTTAA
LOC_Os04g30040
OsAffx.14039.1.S1_s_at--861--1951Chr04:17752935..17752959 (25 bp)
ACTGTGTACTGCATCTTCTAGCTAA
LOC_Os04g30040
OsAffx.14039.1.S1_s_at--411--10011Chr04:17752953..17752977 (25 bp)
TAGCTAACTAGCTTGGTTGTCGCCT
LOC_Os04g30040
OsAffx.14039.1.S1_s_at--521--9071Chr04:17752977..17753001 (25 bp)
TGCTACCTCATTCTGTCTCTAAAAG
LOC_Os04g30040
Target Sequence 
GTAGTGGTGACGTCATCGATTCTATTGAGTTCTCATATGCCGACCATGACGGAAGTGAGCAAGTTGTTGGTCCATGGGGT
GGTCCTGGTGGCAATGCGTATAAGATTGAACTGATGCCTCTGGAATCACTTCAGGGGATCACCGGAACGTTCGGTCCCTT
GGATGCAGCGTCACCTGACACAGTCGTCATTACCTCGCTCACGTTCTCCACGAACCAATGCCTCAGCTACGGGCCGTTTG
GGCAAGGCGCCGGAGGCGGAGGGACTCCATTCACGGCTCCGGGGGAGAGCGACGGGTGCATTGTCGGCTTCTTCGCCCGC
GCGGGGTGTTACCTCGATGCGCTCGGGGTGTACACTCGCACGGACGCCCAACTTTACTAGCTCTTGTCCTCTGTTCGCTA
CTTCGCTGTTGTTGTATCCTGCTTAATTTTCAGCTTCTTTATACTGTGTACTGCATCTTCTAGCTAACTAGCTTGGTTGT
CGCCTGCTACCTCATTCTGTCTCTAAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14039.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis