Browse Element(s) Details


Os.19575.1.A1_at

Description gb:CB628329
DB_XREF= gi:29623318
DB_XREF=OSIIEb03N07.r
CLONE=OSIIEb03N07
TID=Os.19575.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.19575 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_173549.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3001011/11Calcium binding EGF domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g29970OsAffx.26243.1.S1_at11/114+17694340..17695192hypothetical protein
LOC_Os04g29980NANA4+17697317..17698645transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29990OsAffx.3947.1.S1_at11/114+17700755..17704183Calcium binding EGF domain containing protein
LOC_Os04g30000OsAffx.26244.1.S1_at10/114+17716533..17717106hypothetical protein
LOC_Os04g30010Os.19575.1.A1_at11/114+17718708..17722411Calcium binding EGF domain containing protein, expressed
LOC_Os04g30010Os.19575.2.S1_at10/114+17718708..17722411Calcium binding EGF domain containing protein, expressed
LOC_Os04g30020OsAffx.14038.1.S1_at11/114+17725145..17725522hypothetical protein
LOC_Os04g30030Os.50127.1.S1_at4/114+17726046..17729387Protein kinase domain containing protein
LOC_Os04g30040OsAffx.14039.1.S1_s_at11/114+17742051..17753089Jacalin-like lectin domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19575.1.A1_at--118--7531Chr04:17719225..17719249 (25 bp)
GTGGCAAACTCGTTGAGCTCCTGGA
LOC_Os04g30010
Os.19575.1.A1_at--1098--7111Chr04:17719162..17719186 (25 bp)
GTCAGGCAGCATCACTAGCTAGTCA
LOC_Os04g30010
Os.19575.1.A1_at--458--10011Chr04:17719147..17719171 (25 bp)
TAGCTAGTCAATGCTTGGCTAATCC
LOC_Os04g30010
Os.19575.1.A1_at--586--5691Chr04:17719075..17719099 (25 bp)
GACTAGCATTGGCAGATGAAGTACA
LOC_Os04g30010
Os.19575.1.A1_at--84--5131Chr04:17718922..17718946 (25 bp)
GCACAGAATTCGCTAGATGATCCAT
LOC_Os04g30010
Os.19575.1.A1_at--619--6631Chr04:17718838..17718862 (25 bp)
GTTGTGTTGTTTTATCTCTGTGTTA
LOC_Os04g30010
Os.19575.1.A1_at--17--711Chr04:17718809..17718833 (25 bp)
ATGAGTTAATTCTTCCCAGTTGTGG
LOC_Os04g30010
Os.19575.1.A1_at--300--111Chr04:17718801..17718825 (25 bp)
ATTCTTCCCAGTTGTGGTGGTTGAC
LOC_Os04g30010
Os.19575.1.A1_at--455--10811Chr04:17718790..17718814 (25 bp)
TTGTGGTGGTTGACGGGCTTCCCAA
LOC_Os04g30010
Os.19575.1.A1_at--627--5751Chr04:17718779..17718803 (25 bp)
GACGGGCTTCCCAATGTGTGCGGCT
LOC_Os04g30010
Os.19575.1.A1_at--203--7471Chr04:17718764..17718788 (25 bp)
GTGTGCGGCTGTAACCATGCATTGT
LOC_Os04g30010
Target Sequence 
GTGGCAAACTCGTTGAGCTCCTGGACANTGACATAGTAGATGAAGCCAACATGGGAGTTATCNGTCAGGCAGCATCACTA
GCTAGTCAATGCTTGGCTAATCCNAGTTNNTCAAGGCCAACAATGAGGCAAGTGGCNGAGNAGCTTNGNCGACTAGCATT
GGCAGATGAAGTACAACAATGCCCACAACCGCCGNTAGTGCTCGATGGCCTCATCCTCANAGAGATGGGGAGCACANCAT
CANCATGGTANACAGGAAGNGGNACAAGCNNGGGTTTATAACNTTGANAACAATGTCGTTNTAAGCACAGAATTCGCTAG
ATGATCCATAGANCCCTTGTGCTTTATTGAGTGTTANAATGTNTTGTTTTATCNNTGTNTTAGATTATGAGTTGTGTTGT
TTTATCTCTGTGTTAGATTATGAGTTAATTCTTCCCAGTTGTGGTGGTTGACGGGCTTCCCAATGTGTGCGGCTGTAACC
ATGCATTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19575.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis