Browse Element(s) Details


OsAffx.26243.1.S1_at

Description tigr:9632.m02839
TID=OsAffx.26243.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2997011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g29940Os.14919.1.S1_at6/114+17670816..17676743transposon protein, putative, Mutator sub-class
LOC_Os04g29940Os.56216.1.S1_at2/114+17670816..17676743transposon protein, putative, Mutator sub-class
LOC_Os04g29940OsAffx.29313.1.S1_at1/114+17670816..17676743transposon protein, putative, Mutator sub-class
LOC_Os04g29950NANA4+17677985..17681381hypothetical protein
LOC_Os04g29960Os.24971.1.A1_s_at11/114+17686932..17689758Calcium binding EGF domain containing protein, expressed
LOC_Os04g29970OsAffx.26243.1.S1_at11/114+17694340..17695192hypothetical protein
LOC_Os04g29980NANA4+17697317..17698645transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29990OsAffx.3947.1.S1_at11/114+17700755..17704183Calcium binding EGF domain containing protein
LOC_Os04g30000OsAffx.26244.1.S1_at10/114+17716533..17717106hypothetical protein
LOC_Os04g30010Os.19575.1.A1_at11/114+17718708..17722411Calcium binding EGF domain containing protein, expressed
LOC_Os04g30010Os.19575.2.S1_at10/114+17718708..17722411Calcium binding EGF domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26243.1.S1_at--56--7631Chr04:17694749..17694769 (21 bp)
GGGAACACGATCCACCTGGACAGAT
LOC_Os04g29970
OsAffx.26243.1.S1_at--1006--5991Chr04:17694703..17694727 (25 bp)
GAGAGGCGGCGTGCGAAATCTTACC
LOC_Os04g29970
OsAffx.26243.1.S1_at--24--451Chr04:17694686..17694710 (25 bp)
ATCTTACCTCCATTATTCTTCTTGA
LOC_Os04g29970
OsAffx.26243.1.S1_at--769--9571Chr04:17694667..17694691 (25 bp)
TCTTGACATGAGACGCGAGACCCCG
LOC_Os04g29970
OsAffx.26243.1.S1_at--1009--1571Chr04:17694642..17694666 (25 bp)
AGCTCAGTGGGTACAGGGTGTCATC
LOC_Os04g29970
OsAffx.26243.1.S1_at--912--7651Chr04:17694609..17694633 (25 bp)
GGGTTCCCCACGCAAGAACAGGATC
LOC_Os04g29970
OsAffx.26243.1.S1_at--1058--6391Chr04:17694588..17694612 (25 bp)
GATCAGGGACCTTTCACATTTAGTG
LOC_Os04g29970
OsAffx.26243.1.S1_at--787--9171Chr04:17694480..17694504 (25 bp)
TCGAATTTGGGCTCTTGGACCTTTG
LOC_Os04g29970
OsAffx.26243.1.S1_at--493--3611Chr04:17694467..17694491 (25 bp)
CTTGGACCTTTGTGGCAGTGCTTGT
LOC_Os04g29970
OsAffx.26243.1.S1_at--202--3131Chr04:17694419..17694443 (25 bp)
AATTTCTCCATAATCCAAGACCCTG
LOC_Os04g29970
OsAffx.26243.1.S1_at--559--2771Chr04:17694403..17694427 (25 bp)
AAGACCCTGTCCTGCTATTTATTCC
LOC_Os04g29970
Target Sequence 
GGGAACACGATCCACCTGGACAGATCGAAGACAAGAAGATGTTATGGAGAGGCGGCGTGCGAAATCTTACCTCCATTATT
CTTCTTGACATGAGACGCGAGACCCCGAGCTCAGTGGGTACAGGGTGTCATCGGTCTGCAGGGTTCCCCACGCAAGAACA
GGATCAGGGACCTTTCACATTTAGTGAGAAAAAGGGGATGAAAGCGAGGGCACAAATCAATGGAGAGCAACATTTTGCAA
TAACTGGTAGCTTACCAAATAGCAGGAAGTCGAATTTGGGCTCTTGGACCTTTGTGGCAGTGCTTGTGGTGTGGGTGGAA
AAAAACCGAAAATTTCTCCATAATCCAAGACCCTGTCCTGCTATTTATTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26243.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis