Browse Element(s) Details


Os.24971.1.A1_s_at

Description gb:CA763211
DB_XREF= gi:25807250
DB_XREF=BR060012A20A09.ab1
CLONE=BR060012A20A09.ab1
TID=Os.24971.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.24971 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_173063.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2996011/11Calcium binding EGF domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g29930NANA4+17658658..17662825Protein kinase domain containing protein
LOC_Os04g29940Os.14919.1.S1_at6/114+17670816..17676743transposon protein, putative, Mutator sub-class
LOC_Os04g29940Os.56216.1.S1_at2/114+17670816..17676743transposon protein, putative, Mutator sub-class
LOC_Os04g29940OsAffx.29313.1.S1_at1/114+17670816..17676743transposon protein, putative, Mutator sub-class
LOC_Os04g29950NANA4+17677985..17681381hypothetical protein
LOC_Os04g29960Os.24971.1.A1_s_at11/114+17686932..17689758Calcium binding EGF domain containing protein, expressed
LOC_Os04g29970OsAffx.26243.1.S1_at11/114+17694340..17695192hypothetical protein
LOC_Os04g29980NANA4+17697317..17698645transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29990OsAffx.3947.1.S1_at11/114+17700755..17704183Calcium binding EGF domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24971.1.A1_s_at--655--3711Chr04:17687453..17687477 (25 bp)
CTAACTAGTAAGAAGCCGCTGTCAA
LOC_Os04g29960
Os.24971.1.A1_s_at--24--271Chr04:17687425..17687449 (25 bp)
ATAGGAAGAGCCTCACCTTGATGTT
LOC_Os04g29960
Os.24971.1.A1_s_at--941--6112Chr02:16478103..16478123 (21 bp)
GAGTGATGCATCAGGCAGCTGTTCT
NONE
Os.24971.1.A1_s_at--527--8791Chr04:17687286..17687310 (25 bp)
TGTTCCAGGTATGACAAGGCCGACA
LOC_Os04g29960
Os.24971.1.A1_s_at--29--4271Chr04:17687238..17687262 (25 bp)
CCGGCGCCTAGCACTAGCTGATGAA
LOC_Os04g29960
Os.24971.1.A1_s_at--797--2611Chr04:17687197..17687221 (25 bp)
AACCGCCGCTTGTACTTGAGGATTT
LOC_Os04g29960
Os.24971.1.A1_s_at--510--3251Chr04:17687149..17687173 (25 bp)
CAACCAGTGGAGTTTATAGCCTTGA
LOC_Os04g29960
Os.24971.1.A1_s_at--481--3451Chr04:17687079..17687103 (25 bp)
CAGTTTGTTGTATTGATTCCCGCGC
LOC_Os04g29960
Os.24971.1.A1_s_at--446--91Chr04:17687064..17687088 (25 bp)
ATTCCCGCGCGTGGTTTGTAGGTGT
LOC_Os04g29960
Os.24971.1.A1_s_at--994--6591Chr04:17687033..17687057 (25 bp)
GATTGAGTTTTCTTCCTAGTGATGA
LOC_Os04g29960
Os.24971.1.A1_s_at--1046--6931Chr04:17686986..17687010 (25 bp)
GTAGCATTTAGGTGCGCTTTAGAAT
LOC_Os04g29960
Target Sequence 
CTAACTAGTAAGAAGCCGCTGTCAAAAGATAGGAAGAGCCTCACCTTGATGTTTCAGGAGGCAATGGCAGAGGGCACACT
CTCTGAGCTCCTTGATAGTGACATGGTTGACGAAGCTAGTATGAGAGTGATGCATCAGGCAGCTGTTCTAGCAAGTCAAT
GCTTGGTTGTTCCAGGTATGACAAGGCCGACAATGGTGCTGGTGGCAGCGGAGCTCCGGCGCCTAGCACTAGCTGATGAA
CTGCAACAATGCCCACAACCGCCGCTTGTACTTGAGGATTTGAGCTTTGTGGAGATGGGAAGCACAACCAGTGGAGTTTA
TAGCCTTGAGAAGAAAGCTGTGTTGAGCATAGGATTTGCAAGATGATCTATGGACAGTTTGTTGTATTGATTCCCGCGCG
TGGTTTGTAGGTGTGTGTTAGATTGAGTTTTCTTCCTAGTGATGAACTGAATCTGTAAAATAGCATAGTAGCATTTAGGT
GCGCTTTAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24971.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis