Browse Element(s) Details


OsAffx.3947.1.S1_at

Description tigr:9632.m02841
TID=OsAffx.3947.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2999011/11Calcium binding EGF domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g29940Os.14919.1.S1_at6/114+17670816..17676743transposon protein, putative, Mutator sub-class
LOC_Os04g29940Os.56216.1.S1_at2/114+17670816..17676743transposon protein, putative, Mutator sub-class
LOC_Os04g29940OsAffx.29313.1.S1_at1/114+17670816..17676743transposon protein, putative, Mutator sub-class
LOC_Os04g29950NANA4+17677985..17681381hypothetical protein
LOC_Os04g29960Os.24971.1.A1_s_at11/114+17686932..17689758Calcium binding EGF domain containing protein, expressed
LOC_Os04g29970OsAffx.26243.1.S1_at11/114+17694340..17695192hypothetical protein
LOC_Os04g29980NANA4+17697317..17698645transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29990OsAffx.3947.1.S1_at11/114+17700755..17704183Calcium binding EGF domain containing protein
LOC_Os04g30000OsAffx.26244.1.S1_at10/114+17716533..17717106hypothetical protein
LOC_Os04g30010Os.19575.1.A1_at11/114+17718708..17722411Calcium binding EGF domain containing protein, expressed
LOC_Os04g30010Os.19575.2.S1_at10/114+17718708..17722411Calcium binding EGF domain containing protein, expressed
LOC_Os04g30020OsAffx.14038.1.S1_at11/114+17725145..17725522hypothetical protein
LOC_Os04g30030Os.50127.1.S1_at4/114+17726046..17729387Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009620biological_processresponse to fungi
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0005618cellular_componentcell wall
GO:0005886cellular_componentplasma membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3947.1.S1_at--48--7231Chr04:17701313..17701337 (25 bp)
GTCGCACCCTATACTCCATGGTGAT
LOC_Os04g29990
OsAffx.3947.1.S1_at--155--8451Chr04:17701280..17701304 (25 bp)
GGCCAACATCCTACTGGCTGAGGGA
LOC_Os04g29990
OsAffx.3947.1.S1_at--265--6311Chr04:17701216..17701240 (25 bp)
GATGAGAGTACTCCGGCTGTGCCAA
LOC_Os04g29990
OsAffx.3947.1.S1_at--842--8551Chr04:17701029..17701053 (25 bp)
TGGTAAATGGCACACTCCAGGACCT
LOC_Os04g29990
OsAffx.3947.1.S1_at--178--6091Chr04:17700969..17700993 (25 bp)
GAGTAATCCATCGAGTTGCAGTGCT
LOC_Os04g29990
OsAffx.3947.1.S1_at--526--8791Chr04:17700926..17700950 (25 bp)
TGTTCCAGGTACAACGAGACCGTCA
LOC_Os04g29990
OsAffx.3947.1.S1_at--9--2591Chr04:17700914..17700938 (25 bp)
AACGAGACCGTCAATGGCTTTAGTG
LOC_Os04g29990
OsAffx.3947.1.S1_at--113--671Chr04:17700858..17700882 (25 bp)
ATGAATTGCAGCGATACCCGCAGCC
LOC_Os04g29990
OsAffx.3947.1.S1_at--1031--3371Chr04:17700838..17700862 (25 bp)
CAGCCACCACTGGTGCTTGAGGAGT
LOC_Os04g29990
OsAffx.3947.1.S1_at--315--10771Chr04:17700822..17700846 (25 bp)
TTGAGGAGTTGAGCTTTCTGGATAC
LOC_Os04g29990
OsAffx.3947.1.S1_at--160--5091Chr04:17700792..17700816 (25 bp)
GCACCAGTGGGATTTACAGCCTTGA
LOC_Os04g29990
Target Sequence 
GTCGCACCCTATACTCCATGGTGATGTGAAGCCGGCCAACATCCTACTGGCTGAGGGATTGGTCGCAAAGGTGTCGGACT
TTGGCTGCTCAACAATTGATGAGAGTACTCCGGCTGTGCCAAAAGGCACGCCAGGGTATATTGATCCAGACTACCTACTC
GAGTATCAACTCACAGCCAAGAATGACGTATATAGCTTCGGTGTTATTCTTCTTGAGCTTTTAACTGGTAAGAAGCCATT
CTCAAAAGAAAGGAAGAGCTTGACCTTGATGTTTCAGGAGGCTATGGTAAATGGCACACTCCAGGACCTCCTTGACAGTG
ACATAGTCGATGAAGCTAGCATGAGAGTAATCCATCGAGTTGCAGTGCTGGCAAGTCAGTGTTTGGTTGTTCCAGGTACA
ACGAGACCGTCAATGGCTTTAGTGGTGGAGGAGCTCTGGCGGCTTGCGCTAGCAGATGAATTGCAGCGATACCCGCAGCC
ACCACTGGTGCTTGAGGAGTTGAGCTTTCTGGATACGGGAAGCACCAGTGGGATTTACAGCCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3947.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis