Browse Element(s) Details


OsAffx.26247.1.S1_at

Description tigr:9632.m02856
TID=OsAffx.26247.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3014011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30090NANA4+17768135..17769452expressed protein
LOC_Os04g30100NANA4+17772449..17773222transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g30110OsAffx.3949.1.S1_at11/114+17774477..17775280wall-associated kinase 3, putative
LOC_Os04g30120OsAffx.16467.1.S1_at9/114+17776629..17778057hypothetical protein
LOC_Os04g30120Os.26886.2.S1_s_at7/114+17776629..17778057hypothetical protein
LOC_Os04g30120Os.26886.6.S1_s_at6/114+17776629..17778057hypothetical protein
LOC_Os04g30120OsAffx.3425.1.S1_at1/114+17776629..17778057hypothetical protein
LOC_Os04g30130OsAffx.8356.1.S1_x_at2/114+17783882..17789827hypothetical protein
LOC_Os04g30130Os.27088.1.A1_x_at1/114+17783882..17789827hypothetical protein
LOC_Os04g30130OsAffx.14762.1.S1_at1/114+17783882..17789827hypothetical protein
LOC_Os04g30140OsAffx.26247.1.S1_at11/114+17793112..17793584hypothetical protein
LOC_Os04g30150Os.46012.2.S1_x_at8/114+17798259..17802482retrotransposon protein, putative, unclassified
LOC_Os04g30150Os.27088.1.A1_x_at5/114+17798259..17802482retrotransposon protein, putative, unclassified
LOC_Os04g30150Os.46012.3.S1_x_at5/114+17798259..17802482retrotransposon protein, putative, unclassified
LOC_Os04g30160Os.53439.1.S1_at10/114+17813628..17818005Calcium binding EGF domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26247.1.S1_at--171--3091Chr04:17793176..17793316 (25 bp)
AATACCAGAGTTGTTTGCCGTTTGC
LOC_Os04g30140
OsAffx.26247.1.S1_at--830--10271Chr04:17793189..17793329 (25 bp)
TTTGCCGTTTGCAGGTGTTCCTCAC
LOC_Os04g30140
OsAffx.26247.1.S1_at--26--10651Chr04:17793322..17793346 (25 bp)
TTCCTCACCGTAGCTTTGGATTCAT
LOC_Os04g30140
OsAffx.26247.1.S1_at--543--7931Chr04:17793339..17793363 (25 bp)
GGATTCATGATCCTCATTGTTGGAG
LOC_Os04g30140
OsAffx.26247.1.S1_at--455--972Chr04:17793362..17793386 (25 bp)
AGGAGACGTCGTCGGATTCCTCATT
LOC_Os04g30140
OsAffx.26247.1.S1_at--806--2992Chr04:17793409..17793433 (25 bp)
AATGCAATCCCATCTATGAGATCAG
LOC_Os04g30140
OsAffx.26247.1.S1_at--230--6031Chr04:17793426..17793450 (25 bp)
GAGATCAGAAACCACATCAGCGAAA
LOC_Os04g30140
OsAffx.26247.1.S1_at--566--4592Chr04:17793445..17793469 (25 bp)
GCGAAAATCACTCAAACCAAATGCG
LOC_Os04g30140
OsAffx.26247.1.S1_at--851--2351Chr04:17793458..17793482 (25 bp)
AAACCAAATGCGACAGGCCAATGCT
LOC_Os04g30140
OsAffx.26247.1.S1_at--772--872Chr04:17793472..17793496 (25 bp)
AGGCCAATGCTCAAGTCACTCAACA
LOC_Os04g30140
OsAffx.26247.1.S1_at--440--2454Chr06:10484062..10484085 (24 bp)
AAAATCATGGTCACTTGTTTTCAGA
NONE
Target Sequence 
AATACCAGAGTTGTTTGCCGTTTGCAGGTGTTCCTCACCGTAGCTTTGGATTCATGATCCTCATTGTTGGAGGAGACGTC
GTCGGATTCCTCATTGCCCCTGTTCCTCCTCCCCCAAAATGCAATCCCATCTATGAGATCAGAAACCACATCAGCGAAAA
TCACTCAAACCAAATGCGACAGGCCAATGCTCAAGTCACTCAACAAAAAAGGAAAATCATGGTCACTTGTTTTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26247.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis