Browse Element(s) Details


OsAffx.18937.1.S1_at

Description tigr:9639.m01771
TID=OsAffx.18937.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1907011/11hypothetical protein
LOC_Os09g042003/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g302801/11wall-associated kinase 3, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g19030OsAffx.20725.4.S1_at11/1111+10823173..10833313hypothetical protein
LOC_Os11g19030OsAffx.20725.4.S1_x_at10/1111+10823173..10833313hypothetical protein
LOC_Os11g19030OsAffx.20725.3.S1_x_at3/1111+10823173..10833313hypothetical protein
LOC_Os11g19030OsAffx.20725.1.S1_at2/1111+10823173..10833313hypothetical protein
LOC_Os11g19030OsAffx.20725.1.S1_x_at1/1111+10823173..10833313hypothetical protein
LOC_Os11g19040OsAffx.18934.1.S1_x_at4/1111+10834093..10834353hypothetical protein
LOC_Os11g19050OsAffx.18935.1.S1_at11/1111+10837604..10838558hypothetical protein
LOC_Os11g19060OsAffx.18936.1.S1_at11/1111+10841051..10845913AP2/EREBP transcription factor BABY BOOM, putative, expressed
LOC_Os11g19070OsAffx.18937.1.S1_at11/1111+10849054..10849819hypothetical protein
LOC_Os11g19080NANA11+10851577..10854656hypothetical protein
LOC_Os11g19100OsAffx.8750.1.A1_x_at2/1111+10864760..10867900retrotransposon protein, putative, unclassified, expressed
LOC_Os11g19110NANA11+10874212..10881761retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18937.1.S1_at--458--6171Chr11:10849167..10849191 (25 bp)
GAGGATGCTATTGAGGACATCTTAC
LOC_Os11g19070
OsAffx.18937.1.S1_at--459--631Chr11:10849163..10849187 (25 bp)
ATGCTATTGAGGACATCTTACATAT
LOC_Os11g19070
OsAffx.18937.1.S1_at--328--6191Chr11:10849155..10849179 (25 bp)
GAGGACATCTTACATATGTCAGAGG
LOC_Os11g19070
OsAffx.18937.1.S1_at--679--438Chr11:431810..432310 (25 bp)
ATCTTACATATGTCAGAGGACGTCG
NONE
OsAffx.18937.1.S1_at--461--1719Chr11:432325..432348 (24 bp)
ACCACTTTGGTTGGTCCTTCTGCGT
NONE
OsAffx.18937.1.S1_at--281--2035Chr09:2208580..2208604 (25 bp)
ACTTTGGTTGGTCCTTCTGCGTCGT
LOC_Os09g04200
OsAffx.18937.1.S1_at--59--9251Chr11:10849096..10849120 (25 bp)
TCCTTCTGCGTCGTGTAGCAGTCAT
LOC_Os11g19070
OsAffx.18937.1.S1_at--720--10591Chr11:10849093..10849117 (25 bp)
TTCTGCGTCGTGTAGCAGTCATCAT
LOC_Os11g19070
OsAffx.18937.1.S1_at--636--4651Chr11:10849089..10849113 (25 bp)
GCGTCGTGTAGCAGTCATCATAATA
LOC_Os11g19070
OsAffx.18937.1.S1_at--886--7191Chr11:10849087..10849111 (25 bp)
GTCGTGTAGCAGTCATCATAATAGT
LOC_Os11g19070
OsAffx.18937.1.S1_at--127--9431Chr11:10849086..10849110 (25 bp)
TCGTGTAGCAGTCATCATAATAGTG
LOC_Os11g19070
Target Sequence 
GAGGATGCTATTGAGGACATCTTACATATGTCAGAGGACGTCGTTGGCGATGAAGCCACCACTTTGGTTGGTCCTTCTGC
GTCGTGTAGCAGTCATCATAATAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18937.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis