Browse Element(s) Details


OsAffx.8750.1.A1_x_at

Description gb:XM_354060.1
DB_XREF= gi:35189553
TID=OsAffx.8750.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g191002/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g19060OsAffx.18936.1.S1_at11/1111+10841051..10845913AP2/EREBP transcription factor BABY BOOM, putative, expressed
LOC_Os11g19070OsAffx.18937.1.S1_at11/1111+10849054..10849819hypothetical protein
LOC_Os11g19080NANA11+10851577..10854656hypothetical protein
LOC_Os11g19100OsAffx.8750.1.A1_x_at2/1111+10864760..10867900retrotransposon protein, putative, unclassified, expressed
LOC_Os11g19110NANA11+10874212..10881761retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g19120NANA11+10884826..10886991retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g19130Os.17538.1.S1_at11/1111+10888771..10893491expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8750.1.A1_x_at--462--8172Chr11:10864786..10864805 (20 bp)
GGAACGGAACGGAACGGAACATGCA
LOC_Os11g19100
OsAffx.8750.1.A1_x_at--939--5452Chr11:10864786..10864805 (20 bp)
GAACGGAACGGAACGGAACATGCAT
LOC_Os11g19100
OsAffx.8750.1.A1_x_at--364--2571Chr07:28320310..28320334 (25 bp)
AACGGAACGGAACGGAACATGCATC
NONE
OsAffx.8750.1.A1_x_at--255--2111Chr07:28320326..28320350 (25 bp)
ACATGCATCATCATCCCGGTGGTGG
NONE
OsAffx.8750.1.A1_x_at--493--3531Chr07:28320327..28320351 (25 bp)
CATGCATCATCATCCCGGTGGTGGT
NONE
OsAffx.8750.1.A1_x_at--1087--631Chr07:28320328..28320352 (25 bp)
ATGCATCATCATCCCGGTGGTGGTC
NONE
OsAffx.8750.1.A1_x_at--217--9051Chr07:28320329..28320353 (25 bp)
TGCATCATCATCCCGGTGGTGGTCC
NONE
OsAffx.8750.1.A1_x_at--1135--411Chr07:28320332..28320356 (25 bp)
ATCATCATCCCGGTGGTGGTCCGCG
NONE
OsAffx.8750.1.A1_x_at--128--9591Chr07:28320333..28320357 (25 bp)
TCATCATCCCGGTGGTGGTCCGCGG
NONE
OsAffx.8750.1.A1_x_at--1129--7211Chr07:28320348..28320372 (25 bp)
TGGTCCGCGGGGCGGCCTGGCCCGT
NONE
OsAffx.8750.1.A1_x_at--663--3911Chr07:28320364..28320388 (25 bp)
CTGGCCCGTTTTCGCCCATGACGAT
NONE
Target Sequence 
GGAACGGAACGGAACGGAACATGCATCATCATCCCGGTGGTGGTCCGCGGGGCGGCCTGGCCCGTTTTCGCCCATGACGA
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8750.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis