Browse Element(s) Details


Os.46697.1.S1_at

Description gb:CF307232
DB_XREF= gi:33678993
DB_XREF=HDA1--06-C01.g1
CLONE=HDA1--06-C01
TID=Os.46697.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46697 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative retroelement (OSJNBb0023M11.15), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3030011/11retrotransposon protein, putative, unclassified
LOC_Os10g2107011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30260Os.26888.1.A1_s_at3/114+17874058..17877409Protein kinase domain containing protein
LOC_Os04g30260OsAffx.3949.1.S1_at1/114+17874058..17877409Protein kinase domain containing protein
LOC_Os04g30270OsAffx.26249.1.S1_at11/114+17881966..17885176Protein kinase domain containing protein
LOC_Os04g30280OsAffx.14042.1.S1_at11/114+17890733..17896665wall-associated kinase 3, putative
LOC_Os04g30280Os.37971.1.A1_at2/114+17890733..17896665wall-associated kinase 3, putative
LOC_Os04g30280OsAffx.18937.1.S1_at1/114+17890733..17896665wall-associated kinase 3, putative
LOC_Os04g30290OsAffx.26250.1.S1_at11/114+17899216..17900232hypothetical protein
LOC_Os04g30300Os.46697.1.S1_at11/114+17900520..17904143retrotransposon protein, putative, unclassified
LOC_Os04g30310NANA4+17904689..17906695hypothetical protein
LOC_Os04g30320OsAffx.26251.1.S1_at11/114+17908894..17910727F-box family protein, putative, expressed
LOC_Os04g30330Os.26888.1.A1_s_at11/114+17911549..17914637Protein kinase domain containing protein, expressed
LOC_Os04g30340OsAffx.3951.1.S1_at11/114+17918005..17919318wall-associated kinase 2, putative
LOC_Os04g30350Os.46012.3.S1_x_at3/114+17924091..17924573retrotransposon protein, putative, unclassified
LOC_Os04g30350Os.46012.2.S1_x_at3/114+17924091..17924573retrotransposon protein, putative, unclassified
LOC_Os04g30350Os.27088.1.A1_x_at2/114+17924091..17924573retrotransposon protein, putative, unclassified
LOC_Os04g30360OsAffx.26252.1.S1_at11/114+17928616..17929913wall-associated kinase 3, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46697.1.S1_at--953--2333Chr10:10342769..10342793 (25 bp)
AAAGCTCAAAGTCTCAATGCAGGAA
LOC_Os10g21070
Os.46697.1.S1_at--327--9053Chr10:10342786..10342810 (25 bp)
TGCAGGAACTCCTTTGCTAGCAGAA
LOC_Os10g21070
Os.46697.1.S1_at--117--2253Chr10:10342836..10342860 (25 bp)
AAATTGCTCGTCATCTTCAGCTGCA
LOC_Os10g21070
Os.46697.1.S1_at--246--10533Chr10:10342851..10342875 (25 bp)
TTCAGCTGCAAGACCCTATTTTTCT
LOC_Os10g21070
Os.46697.1.S1_at--746--8113Chr10:10342915..10342939 (25 bp)
GGACTACATACAAAACCCCGGACAT
LOC_Os10g21070
Os.46697.1.S1_at--802--2393Chr10:10342926..10342950 (25 bp)
AAAACCCCGGACATTGGTCTCTGAG
LOC_Os10g21070
Os.46697.1.S1_at--429--7812Chr10:10342941..10342965 (25 bp)
GGTCTCTGAGACCAATTCTTTCAAG
LOC_Os10g21070
Os.46697.1.S1_at--34--4833Chr10:10343063..10343087 (25 bp)
GCTCAGACTAACAGCTGCTTAGCTT
LOC_Os10g21070
Os.46697.1.S1_at--406--4773Chr10:10343076..10343100 (25 bp)
GCTGCTTAGCTTTTGATTGCTCTAA
LOC_Os10g21070
Os.46697.1.S1_at--783--6694Chr10:10343115..10343139 (25 bp)
GTTCCAGAGATGTTTGTCCTACTAA
LOC_Os10g21070
Os.46697.1.S1_at--367--9834Chr10:10343137..10343161 (25 bp)
TAAAAGAGCTCTTTCCTTCACTCCT
LOC_Os10g21070
Target Sequence 
AAAGCTCAAAGTCTCAATGCAGGAACTCCTTTGCTAGCAGAAGCTGAAGGATTATTTTTAGCTATGCAAATTGCTCGTCA
TCTTCAGCTGCAAGACCCTATTTTTCTCTCAGATAACAGTGAGATAGTGAATGTTGTGCAGAACGAGGACTACATACAAA
ACCCCGGACATTGGTCTCTGAGACCAATTCTTTCAAGAATTAAAAATTTTCTGCAGGATCAACAAGTTCGAATCATTTGG
ATCTCTAGAGAGCTCAACAAAGTTGCAGATGGCCTTGCAAAGTCAGCAAGACAAGCTCAGACTAACAGCTGCTTAGCTTT
TGATTGCTCTAATATTTCTCACATTTGTTCCAGAGATGTTTGTCCTACTAAAAGAGCTCTTTCCTTCACTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46697.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis