Browse Element(s) Details


Os.15516.1.S1_at

Description gb:CB673499
DB_XREF= gi:29677224
DB_XREF=OSJNEe08A19.r
CLONE=OSJNEe08A19
TID=Os.15516.1
CNT=20
FEA=EST
TIER=Stack
STK=10
UG=Os.15516 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_173064.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3024011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30190OsAffx.25962.1.S1_at11/114+17829789..17835534transposon protein, putative, Mutator sub-class
LOC_Os04g30200Os.52155.1.S1_at1/114+17837152..17838621F-box domain containing protein, expressed
LOC_Os04g30210Os.18061.1.S1_at11/114+17840338..17843102F-box domain containing protein, expressed
LOC_Os04g30220NANA4+17844686..17845063hypothetical protein
LOC_Os04g30230OsAffx.26251.1.S1_at11/114+17850427..17852199F-box family protein, putative
LOC_Os04g30240Os.15516.1.S1_at11/114+17854777..17862047Protein kinase domain containing protein, expressed
LOC_Os04g30250NANA4+17865754..17870219wall-associated kinase-like 1, putative, expressed
LOC_Os04g30260Os.26888.1.A1_s_at3/114+17874058..17877409Protein kinase domain containing protein
LOC_Os04g30260OsAffx.3949.1.S1_at1/114+17874058..17877409Protein kinase domain containing protein
LOC_Os04g30270OsAffx.26249.1.S1_at11/114+17881966..17885176Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15516.1.S1_at--678--8171Chr04:17855344..17855368 (25 bp)
GGAACATTCCATGAGCTTCTTGATA
LOC_Os04g30240
Os.15516.1.S1_at--646--8991Chr04:17855306..17855330 (25 bp)
TGAAGCAAGCATGGGAGTCCTACAT
LOC_Os04g30240
Os.15516.1.S1_at--384--6111Chr04:17855292..17855316 (25 bp)
GAGTCCTACATCAGATTGCGGTTCT
LOC_Os04g30240
Os.15516.1.S1_at--85--6571Chr04:17855264..17855288 (25 bp)
GATTCAATGCTTGGCTCTTCCTGGA
LOC_Os04g30240
Os.15516.1.S1_at--702--9571Chr04:17855249..17855273 (25 bp)
TCTTCCTGGAATGTCAAGGCCGGTG
LOC_Os04g30240
Os.15516.1.S1_at--298--10591Chr04:17855148..17855172 (25 bp)
TTCTCGAGGGTCTCAACTTTGCAGT
LOC_Os04g30240
Os.15516.1.S1_at--218--7851Chr04:17855119..17855143 (25 bp)
GGTAGCATGTGTACAACTTCCTTGT
LOC_Os04g30240
Os.15516.1.S1_at--674--1791Chr04:17855089..17855113 (25 bp)
ACCGAGGGCAATAGCACCGGAGTTT
LOC_Os04g30240
Os.15516.1.S1_at--939--6291Chr04:17855022..17855046 (25 bp)
GATGATCGATTGTGTGTGTGCTATA
LOC_Os04g30240
Os.15516.1.S1_at--378--7471Chr04:17855007..17855031 (25 bp)
GTGTGCTATATTGATTGCTTTACTT
LOC_Os04g30240
Os.15516.1.S1_at--503--631Chr04:17854979..17855003 (25 bp)
ATGCTTGTACGCTTGTGTTAGGTTT
LOC_Os04g30240
Target Sequence 
GGAACATTCCATGAGCTTCTTGATAGCGAAATAATAGATGAAGCAAGCATGGGAGTCCTACATCAGATTGCGGTTCTGGC
GATTCAATGCTTGGCTCTTCCTGGAATGTCAAGGCCGGTGATGGAGCAAGTCGCAAAGGAGCTTCGTCGATTAGCACTAT
CAGATGAAGTGCAGCAATGCCCACAGCCGCCTCTGGTTCTCGAGGGTCTCAACTTTGCAGTGATGGGTAGCATGTGTACA
ACTTCCTTGTTGTACACCGAGGGCAATAGCACCGGAGTTTATGATCTTGAGAAGAAAACCGTGATGAGCACAGAATTTGC
CAGATGATCGATTGTGTGTGTGCTATATTGATTGCTTTACTTTGTATGCTTGTACGCTTGTGTTAGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15516.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis