Browse Element(s) Details


Os.18061.1.S1_at

Description gb:AK103855.1
DB_XREF= gi:32989064
TID=Os.18061.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18061 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033148N10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033148N10, full insert sequence.
FL= gb:AK103855.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3021011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30160Os.53439.1.S1_at10/114+17813628..17818005Calcium binding EGF domain containing protein, expressed
LOC_Os04g30170NANA4+17823865..17824480hypothetical protein
LOC_Os04g30180Os.52155.1.S1_at11/114+17824808..17827711F-box family protein, putative, expressed
LOC_Os04g30190OsAffx.25962.1.S1_at11/114+17829789..17835534transposon protein, putative, Mutator sub-class
LOC_Os04g30200Os.52155.1.S1_at1/114+17837152..17838621F-box domain containing protein, expressed
LOC_Os04g30210Os.18061.1.S1_at11/114+17840338..17843102F-box domain containing protein, expressed
LOC_Os04g30220NANA4+17844686..17845063hypothetical protein
LOC_Os04g30230OsAffx.26251.1.S1_at11/114+17850427..17852199F-box family protein, putative
LOC_Os04g30240Os.15516.1.S1_at11/114+17854777..17862047Protein kinase domain containing protein, expressed
LOC_Os04g30250NANA4+17865754..17870219wall-associated kinase-like 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18061.1.S1_at--1112--3731Chr04:17842545..17842569 (25 bp)
CTCACACTCCGGTTTTGTCATAATG
LOC_Os04g30210
Os.18061.1.S1_at--244--5891Chr04:17842586..17842610 (25 bp)
GAGCGAGCTGGCTCATGCACAAAAA
LOC_Os04g30210
Os.18061.1.S1_at--120--7551Chr04:17842630..17842654 (25 bp)
GTGGCTGTGGTTACATTTCCCAGAA
LOC_Os04g30210
Os.18061.1.S1_at--954--7631Chr04:17842664..17842688 (25 bp)
GGGAGCTGCCAAATCAGTCTACTAT
LOC_Os04g30210
Os.18061.1.S1_at--27--9811Chr04:17842771..17842795 (25 bp)
TAACCAGTTATCTTTTTCTCGTCTT
LOC_Os04g30210
Os.18061.1.S1_at--355--10591Chr04:17842786..17842810 (25 bp)
TTCTCGTCTTACTATTCACCATCAT
LOC_Os04g30210
Os.18061.1.S1_at--39--4111Chr04:17842887..17842911 (25 bp)
CGAAAATCCTCAGTGACTTCCAGCA
LOC_Os04g30210
Os.18061.1.S1_at--686--8951Chr04:17842900..17842924 (25 bp)
TGACTTCCAGCACTAGTGTTCTCAA
LOC_Os04g30210
Os.18061.1.S1_at--146--7431Chr04:17842915..17842939 (25 bp)
GTGTTCTCAAGATGGTTCTGCTTAT
LOC_Os04g30210
Os.18061.1.S1_at--761--5211Chr04:17842960..17842984 (25 bp)
GAATTCATCTTTCACCATCATTTTG
LOC_Os04g30210
Os.18061.1.S1_at--85--10231Chr04:17843014..17843038 (25 bp)
TATTGCTGTGGTCCGCTGTAGCATA
LOC_Os04g30210
Target Sequence 
CTCACACTCCGGTTTTGTCATAATGTNGANCTNATGCTGGTCNTGAGCGAGCTGGCTCATGCACAAAAANNTTACANGTC
TCTGGACGTTNGGTGGCTGTGGTTACATTTCCCAGAAAGGTGTGCTGGGAGCTGCCAAATCAGTCTACTATGAAGTGAAT
TGCAAAAGTCTTGGCCATTATAAGAGGATGTGTTGAAGCTGTTAAGTCATTGCTTAGAGTGCATCATTAGCATTAACCAG
TTATCTTTTTCTCGTCTTACTATTCACCATCATTTTGTACTTGCCAGTACTTAATTGCTGTGGAAAGCTCTAGCATAAGA
ACGTGTTATGGTGTAGATTGTGGAATGAACGAAAATCCTCAGTGACTTCCAGCACTAGTGTTCTCAAGATGGTTCTGCTT
ATTTTGTCTTGAATGAAGTTCAGAATTCATCTTTCACCATCATTTTGTACTTGCTAGTACTATCAGTTAGTCTTTTTATT
GCTGTGGTCCGCTGTAGCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18061.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis