Browse Element(s) Details


Os.142.2.A1_a_at

Description gb:AK061893.1
DB_XREF= gi:32971911
TID=Os.142.2
CNT=27
FEA=FLmRNA
TIER=FL+Stack
STK=16
UG=Os.142 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ferredoxin-nitrite reductase (P0025H06.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-041-G06, full insert sequence.
FL= gb:AK061893.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2548411/11Nitrite/Sulfite reductase ferredoxin-like half domain containing protein, expressed
LOC_Os02g527302/11Ferredoxin-nitrite reductase, chloroplast precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25450OsAffx.27508.85.S1_s_at10/111+14397151..14413734AIG1 family protein, expressed
LOC_Os01g25450Os.16833.1.S1_x_at4/111+14397151..14413734AIG1 family protein, expressed
LOC_Os01g25460Os.35957.1.S1_at11/111+14420371..14422169leucine-rich repeat family protein, putative, expressed
LOC_Os01g25470OsAffx.2085.1.S1_at11/111+14425198..14427377flavin-containing monooxygenase family protein, putative
LOC_Os01g25470Os.37971.1.A1_at1/111+14425198..14427377flavin-containing monooxygenase family protein, putative
LOC_Os01g25484Os.142.2.A1_a_at11/111+14429394..14435943Nitrite/Sulfite reductase ferredoxin-like half domain containing protein, expressed
LOC_Os01g25484Os.12293.4.S1_x_at6/111+14429394..14435943Nitrite/Sulfite reductase ferredoxin-like half domain containing protein, expressed
LOC_Os01g25500Os.53710.1.S1_at11/111+14436171..14437040expressed protein
LOC_Os01g25510Os.12293.3.S2_at11/111+14442488..14443855Alpha-amylase precursor, putative
LOC_Os01g25510Os.12293.3.S2_x_at11/111+14442488..14443855Alpha-amylase precursor, putative
LOC_Os01g25510Os.57437.1.S1_x_at2/111+14442488..14443855Alpha-amylase precursor, putative
LOC_Os01g25520Os.12293.4.S1_x_at10/111+14444842..14447357hypothetical protein
LOC_Os01g25520Os.12293.4.S1_at8/111+14444842..14447357hypothetical protein
LOC_Os01g25520Os.44022.1.S1_x_at1/111+14444842..14447357hypothetical protein
LOC_Os01g25530NANA1+14454283..14457818PPR986-12, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0019419biological_processsulfate reduction
GO:0005739cellular_componentmitochondrion
GO:0009536cellular_componentplastid
GO:0016002molecular_functionsulfite reductase activity
GO:0047889molecular_functionferredoxin-nitrate reductase activity
GO:0050311molecular_functionsulfite reductase (ferredoxin) activity
GO:0050421molecular_functionnitrite reductase (NO-forming) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.142.2.A1_a_at--35--8232Chr01:14435373..14435397 (25 bp)
GGCAACCAGTTCTGCGGCCAGGCCA
LOC_Os01g25484
Os.142.2.A1_a_at--854--3492Chr01:14435391..14435415 (25 bp)
CAGGCCATCATCGAGACGAAGCAGC
LOC_Os01g25484
Os.142.2.A1_a_at--592--5671Chr01:14435523..14435547 (25 bp)
GACATCGGCTTCATGGGCTGCCTCA
LOC_Os01g25484
Os.142.2.A1_a_at--649--4551Chr01:14435629..14435653 (25 bp)
GCGCGTACAAGAAGTCCGTGCCGTG
LOC_Os01g25484
Os.142.2.A1_a_at--933--9511Chr01:14435774..14435798 (25 bp)
TCTCTCGCCGTCCTTGTAAAGTAGA
LOC_Os01g25484
Os.142.2.A1_a_at--545--1191Chr01:14435793..14435817 (25 bp)
AGTAGACGACAATATGCCTTCGCCC
LOC_Os01g25484
Os.142.2.A1_a_at--599--851Chr01:14435818..14435842 (25 bp)
ATGGCACGCTTGTACTGTCACGTTT
LOC_Os01g25484
Os.142.2.A1_a_at--8--9911Chr01:14435830..14435854 (25 bp)
TACTGTCACGTTTTGGTTTGATCTT
LOC_Os01g25484
Os.142.2.A1_a_at--820--7852Chr01:14435844..14435868 (25 bp)
GGTTTGATCTTGTAGCCCAAAAGTT
LOC_Os01g25484
Os.142.2.A1_a_at--172--4551Chr01:14435858..14435882 (25 bp)
GCCCAAAAGTTGTGTTCATTCTCGT
LOC_Os01g25484
Os.142.2.A1_a_at--965--6731Chr01:14435871..14435895 (25 bp)
GTTCATTCTCGTTACAGTCTTACAG
LOC_Os01g25484
Target Sequence 
GGCAACCAGTTCTGCGGCCAGGCCATCATCGAGACGAAGCAGCGGGCGCTGCTGGTGACGTCGCAGGTGGAGAAGCTCGT
GTCGGTGCCCCGGGCGGTGCGGATGCACTGGACCGGCTGCCCCAACAGCTGCGGCCAGGTGCAGGTCGCCGACATCGGCT
TCATGGGCTGCCTCACCAAGGACAGCGCCGGCAAGATCGTTGAGGCGGCCGACATCTTCGTCGGCGGCCGCGTCGGCAGC
GACTCGCACCTCGCCGGCGCGTACAAGAAGTCCGTGCCGTGCGACGAGCTGGCGCCGATCGTCGCCGACATCCTGGTCGA
GCGGTTCGGGGCCGTGCGGAGGGAGAGGGAGGAGGACGAGGAGTAGGAACACAGACTGGGGTGTTTTGCTTGCTCCGGTG
ATCTCTCGCCGTCCTTGTAAAGTAGACGACAATATGCCTTCGCCCATGGCACGCTTGTACTGTCACGTTTTGGTTTGATC
TTGTAGCCCAAAAGTTGTGTTCATTCTCGTTACAGTCTTACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.142.2.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis