Browse Element(s) Details


Os.12293.4.S1_at

Description gb:NM_193986.1
DB_XREF= gi:34915055
GEN=P0025H06.12
TID=Os.12293.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.12293 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative alpha-amylase (P0025H06.12), mRNA.
PROD=putative alpha-amylase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g255208/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25460Os.35957.1.S1_at11/111+14420371..14422169leucine-rich repeat family protein, putative, expressed
LOC_Os01g25470OsAffx.2085.1.S1_at11/111+14425198..14427377flavin-containing monooxygenase family protein, putative
LOC_Os01g25470Os.37971.1.A1_at1/111+14425198..14427377flavin-containing monooxygenase family protein, putative
LOC_Os01g25484Os.142.2.A1_a_at11/111+14429394..14435943Nitrite/Sulfite reductase ferredoxin-like half domain containing protein, expressed
LOC_Os01g25484Os.12293.4.S1_x_at6/111+14429394..14435943Nitrite/Sulfite reductase ferredoxin-like half domain containing protein, expressed
LOC_Os01g25500Os.53710.1.S1_at11/111+14436171..14437040expressed protein
LOC_Os01g25510Os.12293.3.S2_at11/111+14442488..14443855Alpha-amylase precursor, putative
LOC_Os01g25510Os.12293.3.S2_x_at11/111+14442488..14443855Alpha-amylase precursor, putative
LOC_Os01g25510Os.57437.1.S1_x_at2/111+14442488..14443855Alpha-amylase precursor, putative
LOC_Os01g25520Os.12293.4.S1_x_at10/111+14444842..14447357hypothetical protein
LOC_Os01g25520Os.12293.4.S1_at8/111+14444842..14447357hypothetical protein
LOC_Os01g25520Os.44022.1.S1_x_at1/111+14444842..14447357hypothetical protein
LOC_Os01g25530NANA1+14454283..14457818PPR986-12, putative, expressed
LOC_Os01g25540Os.22341.1.S1_at11/111+14463287..14464034Rapid ALkalinization Factor family protein, expressed
LOC_Os01g25550NANA1+14466808..14467011hypothetical protein
LOC_Os01g25560Os.10667.1.S1_at11/111+14468875..14469639rapid alkalinization factor, putative, expressed
LOC_Os01g25569NANA1+14470751..14472417NA

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005739cellular_componentmitochondrion
GO:0047889molecular_functionferredoxin-nitrate reductase activity
GO:0050421molecular_functionnitrite reductase (NO-forming) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12293.4.S1_at--291--1451Chr01:14445063..14445087 (25 bp)
AGAAGTACCAGGCTGGGCTGAACCC
LOC_Os01g25520
Os.12293.4.S1_at--697--2831Chr01:14445065..14445088 (24 bp)
AAGTACCAGGCTGGGCTGAACCCGA
LOC_Os01g25520
Os.12293.4.S1_at--189--1711Chr01:14445069..14445097 (25 bp)
ACCAGGCTGGGCTGAACCCGAGAAG
LOC_Os01g25520
Os.12293.4.S1_at--275--4111NONE
CGCAAGCATCAGTACCGACCGGATT
NONE
Os.12293.4.S1_at--676--3231NONE
CAAGCATCAGTACCGACCGGATTCA
NONE
Os.12293.4.S1_at--496--4971NONE
GCATCAGTACCGACCGGATTCAGTG
NONE
Os.12293.4.S1_at--983--1171Chr01:14445795..14445816 (22 bp)
AGTACCGACCGGATTCAGTGGCCTT
LOC_Os01g25520
Os.12293.4.S1_at--1004--9951Chr01:14445795..14445818 (24 bp)
TACCGACCGGATTCAGTGGCCTTGA
LOC_Os01g25520
Os.12293.4.S1_at--452--7971Chr01:14445905..14445929 (25 bp)
GGATCTGGTAGGGAGGCCGACGATG
LOC_Os01g25520
Os.12293.4.S1_at--662--871Chr01:14445918..14445942 (25 bp)
AGGCCGACGATGGATTTGGTAGGGA
LOC_Os01g25520
Os.12293.4.S1_at--172--7831Chr01:14445929..14445953 (25 bp)
GGATTTGGTAGGGAGGTACGCGGCG
LOC_Os01g25520
Target Sequence 
AGAAGTACCAGGCTGGGCTGAACCCGAGAAGGTGAAGCTCGGGAAGGAGCCCATGTCATTGTTCATGGAGGGCGGCATCA
AGGAGCTCGCCAAGATGCCCATGGAGGAGATCGAGGCCGACAAGCTCTCCAAGGAGGACATCGACGTGCGGCTCAAGTGG
CTCGGCCTCTTCCACCCCCGCAAGCATCAGTACCGACCGGATTCAGTGGCCTTGAGCTCGTGGCCGCCGGATCTCCGACG
GCGGGGCGAGTGGCAGGGTCCGGGTGGGTGGTGGGATCCTGTGAGGATCGAGGGGGCAGCGGGATCTGGTAGGGAGGCCG
ACGATGGATTTGGTAGGGAGGTACGCGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12293.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis