Browse Element(s) Details


Os.22341.1.S1_at

Description gb:AK067878.1
DB_XREF= gi:32977896
TID=Os.22341.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22341 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013123C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013123C07, full insert sequence.
FL= gb:AK067878.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2554011/11Rapid ALkalinization Factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25510Os.12293.3.S2_at11/111+14442488..14443855Alpha-amylase precursor, putative
LOC_Os01g25510Os.12293.3.S2_x_at11/111+14442488..14443855Alpha-amylase precursor, putative
LOC_Os01g25510Os.57437.1.S1_x_at2/111+14442488..14443855Alpha-amylase precursor, putative
LOC_Os01g25520Os.12293.4.S1_x_at10/111+14444842..14447357hypothetical protein
LOC_Os01g25520Os.12293.4.S1_at8/111+14444842..14447357hypothetical protein
LOC_Os01g25520Os.44022.1.S1_x_at1/111+14444842..14447357hypothetical protein
LOC_Os01g25530NANA1+14454283..14457818PPR986-12, putative, expressed
LOC_Os01g25540Os.22341.1.S1_at11/111+14463287..14464034Rapid ALkalinization Factor family protein, expressed
LOC_Os01g25550NANA1+14466808..14467011hypothetical protein
LOC_Os01g25560Os.10667.1.S1_at11/111+14468875..14469639rapid alkalinization factor, putative, expressed
LOC_Os01g25569NANA1+14470751..14472417NA
LOC_Os01g25580NANA1+14473814..14479783retrotransposon protein, putative, unclassified
LOC_Os01g25590NANA1+14480419..14483559retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0007267biological_processcell-cell signaling
GO:0048046cellular_componentapoplast
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22341.1.S1_at--1028--10571Chr01:14463763..14463787 (25 bp)
TTCGGGTTCTCCTCCGAGGATGCGG
LOC_Os01g25540
Os.22341.1.S1_at--611--4211Chr01:14463536..14463560 (25 bp)
CCGCTGCTCTGCTCAAACCGGGATT
LOC_Os01g25540
Os.22341.1.S1_at--960--9691Chr01:14463524..14463548 (25 bp)
TCAAACCGGGATTATTCAAAGTTCG
LOC_Os01g25540
Os.22341.1.S1_at--488--131Chr01:14463511..14463535 (25 bp)
ATTCAAAGTTCGTTTGCCTCGTCTT
LOC_Os01g25540
Os.22341.1.S1_at--645--6851Chr01:14463500..14463524 (25 bp)
GTTTGCCTCGTCTTCTACTTTTTCT
LOC_Os01g25540
Os.22341.1.S1_at--996--10311Chr01:14463457..14463481 (25 bp)
TTTCTTTCGTTTCCTTGTCGCTGTT
LOC_Os01g25540
Os.22341.1.S1_at--523--10671Chr01:14463447..14463471 (25 bp)
TTCCTTGTCGCTGTTTTAACCGTGA
LOC_Os01g25540
Os.22341.1.S1_at--156--1771Chr01:14463429..14463453 (25 bp)
ACCGTGAAAGAATTGGTCTGGGTCG
LOC_Os01g25540
Os.22341.1.S1_at--125--4211Chr01:14463358..14463382 (25 bp)
CCCCTGTATATTGCGATTGGATTCT
LOC_Os01g25540
Os.22341.1.S1_at--1155--2551Chr01:14463305..14463329 (25 bp)
AACTGATGGATTAGATTTGTCATTC
LOC_Os01g25540
Os.22341.1.S1_at--143--6531Chr01:14463292..14463316 (25 bp)
GATTTGTCATTCGTTCAAGGATGAT
LOC_Os01g25540
Target Sequence 
TTCGGGTTCTCCTCCGAGGATGCGGCNNCCGACGGCGCCGCGGTGGTGAGGCGGGTGCTGCAGGGGCAGGGGTACATCAG
CTACGGCGCGCTGCGGCGCGACACCACGCCGTGCTCCGTCCGCGGCGCCTCCTACTACAACTGCCGCCCNGGCGGCCAGG
CCAACCCCTACTCCCGCGGCTGCTCCGCCATCACCCGCTGCCGCGGCTAACCCACCTCCGCCACCACCCGCTGCTCTGCT
CAAACCGGGATTATTCAAAGTTCGTTTGCCTCGTCTTCTACTTTTTCTTTTTCTTTTTNCCCCCCTTTTCTTTCGTTTCC
TTGTCGCTGTTTTAACCGTGAAAGAATTGGTCTGGGTCGGTGNCCCACGAATCGAATCGAGTGAGAACTGAGANNANGAT
GTGTGCCCCCTGTATATTGCGATTGGATTCTTATATTATTATGAATTAAGTCGNTGTATAAACTGATGGATTAGATTTGT
CATTCGTTCAAGGATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22341.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis