Browse Element(s) Details

Os.57437.1.S1_x_at

Description

gb:CF306714
DB_XREF= gi:33678475
DB_XREF=HDA1--04-K10.g1
CLONE=HDA1--04-K10
TID=Os.57437.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57437 (NCBI UniGene Cluster)
UG_TITLE=Aleurone layer tissue mRNA sequence
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os02g52700	11/11	Alpha-amylase precursor, putative, expressed
LOC_Os02g52710	3/11	Alpha-amylase precursor, putative, expressed
LOC_Os01g25510	2/11	Alpha-amylase precursor, putative

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os02g52680	OsAffx.19542.3.S1_x_at	7/11	2	+	32209795..32215415	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g52680	OsAffx.9949.1.S1_at	1/11	2	+	32209795..32215415	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g52690	OsAffx.22848.3.S1_x_at	10/11	2	+	32221789..32228954	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g52690	OsAffx.22848.4.S1_at	2/11	2	+	32221789..32228954	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g52690	OsAffx.22848.4.S1_x_at	1/11	2	+	32221789..32228954	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g52700	Os.57437.1.S1_at	11/11	2	+	32237297..32239099	Alpha-amylase precursor, putative, expressed
LOC_Os02g52700	Os.57437.1.S1_x_at	11/11	2	+	32237297..32239099	Alpha-amylase precursor, putative, expressed
LOC_Os02g52700	Os.57438.1.S1_at	11/11	2	+	32237297..32239099	Alpha-amylase precursor, putative, expressed
LOC_Os02g52700	Os.12293.3.S2_x_at	3/11	2	+	32237297..32239099	Alpha-amylase precursor, putative, expressed
LOC_Os02g52710	Os.49249.1.S1_at	11/11	2	+	32242460..32244308	Alpha-amylase precursor, putative, expressed
LOC_Os02g52710	Os.12293.3.S2_x_at	5/11	2	+	32242460..32244308	Alpha-amylase precursor, putative, expressed
LOC_Os02g52710	Os.12293.3.S2_at	3/11	2	+	32242460..32244308	Alpha-amylase precursor, putative, expressed
LOC_Os02g52710	Os.57437.1.S1_x_at	3/11	2	+	32242460..32244308	Alpha-amylase precursor, putative, expressed
LOC_Os02g52720	Os.53710.1.S1_at	1/11	2	+	32247269..32247932	SCP-2 sterol transfer family protein
LOC_Os02g52730	Os.12293.4.S1_x_at	3/11	2	+	32248395..32251488	Ferredoxin-nitrite reductase, chloroplast precursor, putative
LOC_Os02g52730	Os.142.2.A1_a_at	2/11	2	+	32248395..32251488	Ferredoxin-nitrite reductase, chloroplast precursor, putative
LOC_Os02g52744	Os.5136.1.S1_a_at	11/11	2	+	32255725..32261665	DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52744	Os.5136.1.S1_at	10/11	2	+	32255725..32261665	DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52744	Os.5136.2.S1_x_at	10/11	2	+	32255725..32261665	DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52744	OsAffx.12616.1.S1_at	3/11	2	+	32255725..32261665	DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52744	Os.50229.1.S1_at	1/11	2	+	32255725..32261665	DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52760	OsAffx.3048.1.S1_at	11/11	2	+	32263034..32263530	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0005983	biological_process	starch catabolism
GO:0009739	biological_process	response to gibberellic acid stimulus
GO:0005576	cellular_component	extracellular region
GO:0009507	cellular_component	chloroplast
GO:0004556	molecular_function	alpha-amylase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.57437.1.S1_x_at--1010--295	1	Chr02:32237342..32237366 (25 bp)	AATGGCGAGCAAACGCTTCTTGTCC	LOC_Os02g52700
Os.57437.1.S1_x_at--126--851	2	Chr02:32237407..32237431 (25 bp)	TGGCAGCCGGGCAAGTCCTGTTTCA	LOC_Os02g52700
Os.57437.1.S1_x_at--975--113	1	Chr02:32237420..32237544 (25 bp)	AGTCCTGTTTCAGGGCTTCAACTGG	LOC_Os02g52700
Os.57437.1.S1_x_at--892--449	1	Chr02:32237640..32237664 (25 bp)	GCCGTCTCAATCTGTCGCCGAACAA	LOC_Os02g52700
Os.57437.1.S1_x_at--559--723	1	Chr02:32237653..32237766 (25 bp)	GTCGCCGAACAAGGCTACATGCCGG	LOC_Os02g52700
Os.57437.1.S1_x_at--730--835	1	Chr02:32237767..32237791 (25 bp)	GGCGGCTGTACGATCTGGACGCTTC	LOC_Os02g52700
Os.57437.1.S1_x_at--930--579	1	Chr02:32237784..32237808 (25 bp)	GACGCTTCCAAGTACGGCAACGAGG	LOC_Os02g52700
Os.57437.1.S1_x_at--263--259	2	Chr02:32237802..32237826 (25 bp)	AACGAGGCGCAGCTCAAGTCGCTGA	LOC_Os02g52700
Os.57437.1.S1_x_at--718--285	1	Chr02:32237817..32237841 (25 bp)	AAGTCGCTGATCGAGGCGTTCCACG	LOC_Os02g52700
Os.57437.1.S1_x_at--962--287	3	Chr02:32237844..32237868 (25 bp)	AAGGGCGTCCAGGTGATCGCCGACA	LOC_Os02g52700
Os.57437.1.S1_x_at--428--45	2	Chr02:32237913..32237937 (25 bp)	ATCTACTGCCTCTTCGAGGGCGGGA	LOC_Os02g52700

Target Sequence

AATGGCGAGCAAACGCTTCTTGTCCCTGTCCCTGCTCATCCTCCTCCTCGGCTTCTCCTCCAGCTTGGCAGCCGGGCAAG
TCCTGTTTCAGGGCTTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACATGCTGATGGGCAAGGTGGACGAC
ATCGCCGCCGCCGGCATCACCCACGTCTGGCTCCCTCCGCCGTCTCAATCTGTCGCCGAACAAGGCTACATGCCGGGGCG
GCTGTACGATCTGGACGCTTCCAAGTACGGCAACGAGGCGCAGCTCAAGTCGCTGATCGAGGCGTTCCACGGCAAGGGCG
TCCAGGTGATCGCCGACATCGTCATCAACCACCGCACGGCGGAGCACAAGGACGGCCGCGGCATCTACTGCCTCTTCGAG
GGCGGGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis