Browse Element(s) Details


Os.57437.1.S1_at

Description gb:CF306714
DB_XREF= gi:33678475
DB_XREF=HDA1--04-K10.g1
CLONE=HDA1--04-K10
TID=Os.57437.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57437 (NCBI UniGene Cluster)
UG_TITLE=Aleurone layer tissue mRNA sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5270011/11Alpha-amylase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52680OsAffx.19542.3.S1_x_at7/112+32209795..32215415retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g52680OsAffx.9949.1.S1_at1/112+32209795..32215415retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g52690OsAffx.22848.3.S1_x_at10/112+32221789..32228954retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g52690OsAffx.22848.4.S1_at2/112+32221789..32228954retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g52690OsAffx.22848.4.S1_x_at1/112+32221789..32228954retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g52700Os.57437.1.S1_at11/112+32237297..32239099Alpha-amylase precursor, putative, expressed
LOC_Os02g52700Os.57437.1.S1_x_at11/112+32237297..32239099Alpha-amylase precursor, putative, expressed
LOC_Os02g52700Os.57438.1.S1_at11/112+32237297..32239099Alpha-amylase precursor, putative, expressed
LOC_Os02g52700Os.12293.3.S2_x_at3/112+32237297..32239099Alpha-amylase precursor, putative, expressed
LOC_Os02g52710Os.49249.1.S1_at11/112+32242460..32244308Alpha-amylase precursor, putative, expressed
LOC_Os02g52710Os.12293.3.S2_x_at5/112+32242460..32244308Alpha-amylase precursor, putative, expressed
LOC_Os02g52710Os.12293.3.S2_at3/112+32242460..32244308Alpha-amylase precursor, putative, expressed
LOC_Os02g52710Os.57437.1.S1_x_at3/112+32242460..32244308Alpha-amylase precursor, putative, expressed
LOC_Os02g52720Os.53710.1.S1_at1/112+32247269..32247932SCP-2 sterol transfer family protein
LOC_Os02g52730Os.12293.4.S1_x_at3/112+32248395..32251488Ferredoxin-nitrite reductase, chloroplast precursor, putative
LOC_Os02g52730Os.142.2.A1_a_at2/112+32248395..32251488Ferredoxin-nitrite reductase, chloroplast precursor, putative
LOC_Os02g52744Os.5136.1.S1_a_at11/112+32255725..32261665DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52744Os.5136.1.S1_at10/112+32255725..32261665DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52744Os.5136.2.S1_x_at10/112+32255725..32261665DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52744OsAffx.12616.1.S1_at3/112+32255725..32261665DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52744Os.50229.1.S1_at1/112+32255725..32261665DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52760OsAffx.3048.1.S1_at11/112+32263034..32263530hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005983biological_processstarch catabolism
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0005576cellular_componentextracellular region
GO:0009507cellular_componentchloroplast
GO:0004556molecular_functionalpha-amylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57437.1.S1_at--211--5611Chr02:32237339..32237363 (25 bp)
GACAATGGCGAGCAAACGCTTCTTG
LOC_Os02g52700
Os.57437.1.S1_at--25--2231Chr02:32237340..32237364 (25 bp)
ACAATGGCGAGCAAACGCTTCTTGT
LOC_Os02g52700
Os.57437.1.S1_at--919--3191Chr02:32237341..32237365 (25 bp)
CAATGGCGAGCAAACGCTTCTTGTC
LOC_Os02g52700
Os.57437.1.S1_at--1009--2951Chr02:32237342..32237366 (25 bp)
AATGGCGAGCAAACGCTTCTTGTCC
LOC_Os02g52700
Os.57437.1.S1_at--1053--851Chr02:32237343..32237367 (25 bp)
ATGGCGAGCAAACGCTTCTTGTCCC
LOC_Os02g52700
Os.57437.1.S1_at--825--8371Chr02:32237345..32237369 (25 bp)
GGCGAGCAAACGCTTCTTGTCCCTG
LOC_Os02g52700
Os.57437.1.S1_at--1013--4611Chr02:32237346..32237370 (25 bp)
GCGAGCAAACGCTTCTTGTCCCTGT
LOC_Os02g52700
Os.57437.1.S1_at--1012--4071Chr02:32237347..32237371 (25 bp)
CGAGCAAACGCTTCTTGTCCCTGTC
LOC_Os02g52700
Os.57437.1.S1_at--698--4151Chr02:32237639..32237663 (25 bp)
CGCCGTCTCAATCTGTCGCCGAACA
LOC_Os02g52700
Os.57437.1.S1_at--893--4491Chr02:32237640..32237664 (25 bp)
GCCGTCTCAATCTGTCGCCGAACAA
LOC_Os02g52700
Os.57437.1.S1_at--553--4231Chr02:32237641..32237665 (25 bp)
CCGTCTCAATCTGTCGCCGAACAAG
LOC_Os02g52700
Target Sequence 
GACAATGGCGAGCAAACGCTTCTTGTCCCTGTCCCTGCTCATCCTCCTCCTCGGCTTCTCCTCCAGCTTGGCAGCCGGGC
AAGTCCTGTTTCAGGGCTTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACATGCTGATGGGCAAGGTGGAC
GACATCGCCGCCGCCGGCATCACCCACGTCTGGCTCCCTCCGCCGTCTCAATCTGTCGCCGAACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57437.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis