Browse Element(s) Details

Os.5136.1.S1_a_at

Description

gb:AK067075.1
DB_XREF= gi:32977093
TID=Os.5136.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5136 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013091G15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013091G15, full insert sequence.
FL= gb:AK067075.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os02g52744	11/11	DCL protein, chloroplast precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os02g52700	Os.57437.1.S1_at	11/11	2	+	32237297..32239099	Alpha-amylase precursor, putative, expressed
LOC_Os02g52700	Os.57437.1.S1_x_at	11/11	2	+	32237297..32239099	Alpha-amylase precursor, putative, expressed
LOC_Os02g52700	Os.57438.1.S1_at	11/11	2	+	32237297..32239099	Alpha-amylase precursor, putative, expressed
LOC_Os02g52700	Os.12293.3.S2_x_at	3/11	2	+	32237297..32239099	Alpha-amylase precursor, putative, expressed
LOC_Os02g52710	Os.49249.1.S1_at	11/11	2	+	32242460..32244308	Alpha-amylase precursor, putative, expressed
LOC_Os02g52710	Os.12293.3.S2_x_at	5/11	2	+	32242460..32244308	Alpha-amylase precursor, putative, expressed
LOC_Os02g52710	Os.12293.3.S2_at	3/11	2	+	32242460..32244308	Alpha-amylase precursor, putative, expressed
LOC_Os02g52710	Os.57437.1.S1_x_at	3/11	2	+	32242460..32244308	Alpha-amylase precursor, putative, expressed
LOC_Os02g52720	Os.53710.1.S1_at	1/11	2	+	32247269..32247932	SCP-2 sterol transfer family protein
LOC_Os02g52730	Os.12293.4.S1_x_at	3/11	2	+	32248395..32251488	Ferredoxin-nitrite reductase, chloroplast precursor, putative
LOC_Os02g52730	Os.142.2.A1_a_at	2/11	2	+	32248395..32251488	Ferredoxin-nitrite reductase, chloroplast precursor, putative
LOC_Os02g52744	Os.5136.1.S1_a_at	11/11	2	+	32255725..32261665	DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52744	Os.5136.1.S1_at	10/11	2	+	32255725..32261665	DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52744	Os.5136.2.S1_x_at	10/11	2	+	32255725..32261665	DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52744	OsAffx.12616.1.S1_at	3/11	2	+	32255725..32261665	DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52744	Os.50229.1.S1_at	1/11	2	+	32255725..32261665	DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52760	OsAffx.3048.1.S1_at	11/11	2	+	32263034..32263530	hypothetical protein
LOC_Os02g52770	Os.9397.1.S1_at	11/11	2	+	32268002..32269372	expressed protein
LOC_Os02g52780	Os.11781.1.S1_at	11/11	2	+	32270776..32275781	bZIP transcription factor family protein, expressed
LOC_Os02g52790	OsAffx.12617.1.S1_at	11/11	2	+	32276805..32277407	PB1 domain containing protein
LOC_Os02g52800	OsAffx.24838.1.S1_at	11/11	2	+	32278116..32279746	beta-mannan endohydrolase, putative, expressed
LOC_Os02g52810	Os.27898.1.A1_at	11/11	2	+	32280722..32286221	Remorin, C-terminal region family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006306	biological_process	DNA methylation
GO:0006350	biological_process	transcription
GO:0035194	biological_process	RNA-mediated posttranscriptional gene silencing
GO:0005634	cellular_component	nucleus
GO:0030880	cellular_component	RNA polymerase complex
GO:0003677	molecular_function	DNA binding
GO:0003899	molecular_function	DNA-directed RNA polymerase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.5136.1.S1_a_at--824--691	1	Chr02:32255999..32256023 (25 bp)	GTATGCAGATAGTTTCATTCTCAGA	LOC_Os02g52744
Os.5136.1.S1_a_at--1107--503	1	Chr02:32255995..32256019 (25 bp)	GCAGATAGTTTCATTCTCAGACATT	LOC_Os02g52744
Os.5136.1.S1_a_at--892--683	1	Chr02:32255988..32256012 (25 bp)	GTTTCATTCTCAGACATTTTCGCAG	LOC_Os02g52744
Os.5136.1.S1_a_at--765--1055	1	Chr02:32255986..32256010 (25 bp)	TTCATTCTCAGACATTTTCGCAGGA	LOC_Os02g52744
Os.5136.1.S1_a_at--978--1057	1	Chr02:32255982..32256006 (25 bp)	TTCTCAGACATTTTCGCAGGAGGCA	LOC_Os02g52744
Os.5136.1.S1_a_at--17--341	1	Chr02:32255978..32256002 (25 bp)	CAGACATTTTCGCAGGAGGCAAGAT	LOC_Os02g52744
Os.5136.1.S1_a_at--438--17	1	Chr02:32255973..32255997 (25 bp)	ATTTTCGCAGGAGGCAAGATTACCG	LOC_Os02g52744
Os.5136.1.S1_a_at--18--469	1	Chr02:32255967..32255991 (25 bp)	GCAGGAGGCAAGATTACCGAATTAG	LOC_Os02g52744
Os.5136.1.S1_a_at--351--821	1	Chr02:32255961..32255985 (25 bp)	GGCAAGATTACCGAATTAGTGACTC	LOC_Os02g52744
Os.5136.1.S1_a_at--319--655	1	Chr02:32255956..32255980 (25 bp)	GATTACCGAATTAGTGACTCGTAAA	LOC_Os02g52744
Os.5136.1.S1_a_at--79--1007	1	Chr02:32255945..32255969 (25 bp)	TAGTGACTCGTAAAATTATTTCTTG	LOC_Os02g52744

Target Sequence

GTATGCAGATAGTTTCATTCTCAGACATTTTCGCAGGAGGCAAGATTACCGAATTAGTGACTCGTAAAATTATTTCTTG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis