Browse Element(s) Details


Os.27898.1.A1_at

Description gb:AK122109.1
DB_XREF= gi:37991755
TID=Os.27898.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27898 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033127E16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033127E16, full insert sequence.
FL= gb:AK122109.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5281011/11Remorin, C-terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52744Os.5136.1.S1_a_at11/112+32255725..32261665DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52744Os.5136.1.S1_at10/112+32255725..32261665DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52744Os.5136.2.S1_x_at10/112+32255725..32261665DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52744OsAffx.12616.1.S1_at3/112+32255725..32261665DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52744Os.50229.1.S1_at1/112+32255725..32261665DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52760OsAffx.3048.1.S1_at11/112+32263034..32263530hypothetical protein
LOC_Os02g52770Os.9397.1.S1_at11/112+32268002..32269372expressed protein
LOC_Os02g52780Os.11781.1.S1_at11/112+32270776..32275781bZIP transcription factor family protein, expressed
LOC_Os02g52790OsAffx.12617.1.S1_at11/112+32276805..32277407PB1 domain containing protein
LOC_Os02g52800OsAffx.24838.1.S1_at11/112+32278116..32279746beta-mannan endohydrolase, putative, expressed
LOC_Os02g52810Os.27898.1.A1_at11/112+32280722..32286221Remorin, C-terminal region family protein, expressed
LOC_Os02g52820Os.51673.1.S1_at11/112+32289451..32292822expressed protein
LOC_Os02g52830Os.51956.1.S1_at11/112+32294664..32298113Lipase family protein, expressed
LOC_Os02g52840Os.53448.1.S1_at10/112+32304930..32306315Flavonol synthase/flavanone 3-hydroxylase, putative, expressed
LOC_Os02g52850Os.53369.1.S1_at11/112+32307084..32310123D-mannose binding lectin family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27898.1.A1_at--398--131Chr02:32281480..32281504 (25 bp)
ATTCAGTTGCTGTTTCACCTATCGT
LOC_Os02g52810
Os.27898.1.A1_at--1162--1731Chr02:32281464..32281488 (25 bp)
ACCTATCGTGCTTGCTAGTTGTGAC
LOC_Os02g52810
Os.27898.1.A1_at--228--291Chr02:32281439..32281463 (25 bp)
ATAGTTGGTACCGTGGGCGTAGCAA
LOC_Os02g52810
Os.27898.1.A1_at--343--2051Chr02:32281276..32281419 (25 bp)
ACTTTTTGGACGTTGCAGCTCATGT
LOC_Os02g52810
Os.27898.1.A1_at--846--7111Chr02:32281223..32281247 (25 bp)
GTCAGATTTTTCCTTGCTGTGGCAG
LOC_Os02g52810
Os.27898.1.A1_at--944--191Chr02:32281085..32281109 (25 bp)
ATTTCGTGGATTATTGCTCCCGTTA
LOC_Os02g52810
Os.27898.1.A1_at--127--10611Chr02:32281060..32281084 (25 bp)
TTCTGTGCCTACAATCAATCTCTGT
LOC_Os02g52810
Os.27898.1.A1_at--232--8751Chr02:32281038..32281062 (25 bp)
TGTACACCCAATAGAAGCTCCTTCG
LOC_Os02g52810
Os.27898.1.A1_at--341--6011Chr02:32281008..32281032 (25 bp)
GAGAGCTTTATGCTAGTCACCACCA
LOC_Os02g52810
Os.27898.1.A1_at--379--6611Chr02:32280983..32281007 (25 bp)
GATTGGCCAGGTTCAGTGGTTCTCA
LOC_Os02g52810
Os.27898.1.A1_at--993--9571Chr02:32280840..32280863 (24 bp)
TCTTGTCCAGTTTTGCTCTTTGAAA
LOC_Os02g52810
Target Sequence 
ATTCAGTTGCTGTTTCACCTATCGTGCTTGCTAGTTGTGACATAGTTGGTACCGTGGGCGTAGCAATGGATGTACCTTTG
TAGAAACTTTTTGGACGTTGCAGCTCATGTCAGCCAACAAATCAGAATTAATCAGGAAGTCAGATTTTTCCTTGCTGTGG
CAGCTGGAGGTGACGGGGTTATTTAAAGAGAATTTGCATGGTCTGATCGATGAAATACCTGTAGTGCCAGTGGAGTGGTA
TAAATCAGTCATCGAGCAAAATCTATATTGTAGTTAATTTCGTGGATTATTGCTCCCGTTATTCTGTGCCTACAATCAAT
CTCTGTACACCCAATAGAAGCTCCTTCGAGTTCGAGAGCTTTATGCTAGTCACCACCAGATTGGCCAGGTTCAGTGGTTC
TCATTCTGATTGATATGTATCTTTCCATGGGATTCTGTAAGCAAAGCAAGCCTTGGGGCTTGTACTGATATATTGTATTG
AAAGAGGTTATGAGAGCTGCAAGCTACGACTGCAGCTTGCTCTCTTGTCCAGTTTTGCTCTTTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27898.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis