Browse Element(s) Details


Os.11781.1.S1_at

Description gb:AK072062.1
DB_XREF= gi:32982085
TID=Os.11781.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11781 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013109E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013109E06, full insert sequence.
FL= gb:AK072062.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5278011/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52720Os.53710.1.S1_at1/112+32247269..32247932SCP-2 sterol transfer family protein
LOC_Os02g52730Os.12293.4.S1_x_at3/112+32248395..32251488Ferredoxin-nitrite reductase, chloroplast precursor, putative
LOC_Os02g52730Os.142.2.A1_a_at2/112+32248395..32251488Ferredoxin-nitrite reductase, chloroplast precursor, putative
LOC_Os02g52744Os.5136.1.S1_a_at11/112+32255725..32261665DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52744Os.5136.1.S1_at10/112+32255725..32261665DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52744Os.5136.2.S1_x_at10/112+32255725..32261665DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52744OsAffx.12616.1.S1_at3/112+32255725..32261665DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52744Os.50229.1.S1_at1/112+32255725..32261665DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52760OsAffx.3048.1.S1_at11/112+32263034..32263530hypothetical protein
LOC_Os02g52770Os.9397.1.S1_at11/112+32268002..32269372expressed protein
LOC_Os02g52780Os.11781.1.S1_at11/112+32270776..32275781bZIP transcription factor family protein, expressed
LOC_Os02g52790OsAffx.12617.1.S1_at11/112+32276805..32277407PB1 domain containing protein
LOC_Os02g52800OsAffx.24838.1.S1_at11/112+32278116..32279746beta-mannan endohydrolase, putative, expressed
LOC_Os02g52810Os.27898.1.A1_at11/112+32280722..32286221Remorin, C-terminal region family protein, expressed
LOC_Os02g52820Os.51673.1.S1_at11/112+32289451..32292822expressed protein
LOC_Os02g52830Os.51956.1.S1_at11/112+32294664..32298113Lipase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006950biological_processresponse to stress
GO:0009414biological_processresponse to water deprivation
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0010182biological_processsugar mediated signaling
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11781.1.S1_at--832--1911Chr02:32271320..32271344 (25 bp)
ACGGGTCCATGGTGATCGAAGCTAA
LOC_Os02g52780
Os.11781.1.S1_at--874--8611Chr02:32271149..32271173 (25 bp)
TGGTGAAGCTGCCAGTTACCTGTAA
LOC_Os02g52780
Os.11781.1.S1_at--370--7871Chr02:32271088..32271112 (25 bp)
GGTTAGTTCAGAATCGCCAGATCGA
LOC_Os02g52780
Os.11781.1.S1_at--849--6391Chr02:32271069..32271093 (25 bp)
GATCGATCTGCCCTTGTAGGCCAAC
LOC_Os02g52780
Os.11781.1.S1_at--782--6911Chr02:32271054..32271078 (25 bp)
GTAGGCCAACCATTAGTCCGTGGGC
LOC_Os02g52780
Os.11781.1.S1_at--817--7171Chr02:32270976..32271000 (25 bp)
GTCTGAGTTATATCCAAGCATTGTA
LOC_Os02g52780
Os.11781.1.S1_at--609--1731Chr02:32270947..32270971 (25 bp)
ACCTATTTAACCATGGTGCCTGCTA
LOC_Os02g52780
Os.11781.1.S1_at--478--7291Chr02:32270932..32270956 (25 bp)
GTGCCTGCTACCTGTATTGTATTTT
LOC_Os02g52780
Os.11781.1.S1_at--69--10211Chr02:32270913..32270937 (25 bp)
TATTTTGCTGCTGTAGGAACCTATG
LOC_Os02g52780
Os.11781.1.S1_at--170--5431Chr02:32270897..32270921 (25 bp)
GAACCTATGTCGGTGTTACCATCTT
LOC_Os02g52780
Os.11781.1.S1_at--640--6992Chr09:426372..426773 (25 bp)
GTACTTTTCCTTGCCATTTTGGACA
NONE
Target Sequence 
ACGGGTCCATGGTGATCGAAGCTAAAGGCCTAGTTACCTGTAACTAGAACACAGTCCTTTCAATGTGAGCAGTGATCATA
GTAGTTGTAGGATGGTGAAGCTGAAGACCTGGTTACCTGTAACTAGAACACAGTCCTTTCAAAGTGAGCAGTGATTACAG
TAGTAGTAGGATGGTGAAGCTGCCAGTTACCTGTAACTAGAACACAGTCCTTTCAAAGTGAGTATAGTAGTAGGTTAGTT
CAGAATCGCCAGATCGATCTGCCCTTGTAGGCCAACCATTAGTCCGTGGGCTTGTCTCTTGGGCGGACAGGCTGCCTGAG
ATATTCACTCGATAGGTTTTAGTTGTCTGAGTTATATCCAAGCATTGTATGTAACCTATTTAACCATGGTGCCTGCTACC
TGTATTGTATTTTGCTGCTGTAGGAACCTATGTCGGTGTTACCATCTTGTTCTTAATTTGTGTACTTCTCTTGCCATTTT
GGATAAGATGTATCTGAACTTATACATATGTACTTTTCCTTGCCATTTTGGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11781.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis