Browse Element(s) Details


Os.51956.1.S1_at

Description gb:AK064404.1
DB_XREF= gi:32974422
TID=Os.51956.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51956 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033123M10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-H07, full insert sequence.
FL= gb:AK103250.1 gb:AK064404.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5283011/11Lipase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52780Os.11781.1.S1_at11/112+32270776..32275781bZIP transcription factor family protein, expressed
LOC_Os02g52790OsAffx.12617.1.S1_at11/112+32276805..32277407PB1 domain containing protein
LOC_Os02g52800OsAffx.24838.1.S1_at11/112+32278116..32279746beta-mannan endohydrolase, putative, expressed
LOC_Os02g52810Os.27898.1.A1_at11/112+32280722..32286221Remorin, C-terminal region family protein, expressed
LOC_Os02g52820Os.51673.1.S1_at11/112+32289451..32292822expressed protein
LOC_Os02g52830Os.51956.1.S1_at11/112+32294664..32298113Lipase family protein, expressed
LOC_Os02g52840Os.53448.1.S1_at10/112+32304930..32306315Flavonol synthase/flavanone 3-hydroxylase, putative, expressed
LOC_Os02g52850Os.53369.1.S1_at11/112+32307084..32310123D-mannose binding lectin family protein, expressed
LOC_Os02g52860Os.8496.1.S1_at11/112+32313510..32317463Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os02g52870OsAffx.12618.1.S1_at10/112+32318605..32320085Zinc finger, C3HC4 type family protein
LOC_Os02g52880Os.10895.1.S1_at11/112+32320298..32324247expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51956.1.S1_at--98--8411Chr02:32295813..32295837 (25 bp)
GGCCCTTCTGTTCAAGCACTTTGGG
LOC_Os02g52830
Os.51956.1.S1_at--412--10251Chr02:32295794..32295818 (25 bp)
TTTGGGACGTGCCTCTACTTCGACA
LOC_Os02g52830
Os.51956.1.S1_at--368--3771Chr02:32295782..32295806 (25 bp)
CTCTACTTCGACAGCTTCTACAAAG
LOC_Os02g52830
Os.51956.1.S1_at--757--1551Chr02:32295775..32295794 (20 bp)
AGCTTCTACAAAGGCCATGTGACGG
LOC_Os02g52830
Os.51956.1.S1_at--943--1911Chr02:32295089..32295113 (25 bp)
ACGGTGGTGCCCAAGTACGCGAACG
LOC_Os02g52830
Os.51956.1.S1_at--112--10631Chr02:32295041..32295065 (25 bp)
TTCGTCATCGGCTATGTCGACGGGC
LOC_Os02g52830
Os.51956.1.S1_at--22--1671Chr02:32294893..32294917 (25 bp)
AGCCGCTCCGATAGGTAGCTCGTCG
LOC_Os02g52830
Os.51956.1.S1_at--503--7171Chr02:32294866..32294890 (25 bp)
GTCGGCGCCAACACATTTAGTAGTA
LOC_Os02g52830
Os.51956.1.S1_at--940--2371Chr02:32294842..32294866 (25 bp)
AAACTAGTAACAGGCTTGTGATTCA
LOC_Os02g52830
Os.51956.1.S1_at--1052--5491Chr02:32294715..32294739 (25 bp)
GAACAAGACAGTGTAGATTCGATGT
LOC_Os02g52830
Os.51956.1.S1_at--269--6271Chr02:32294695..32294719 (25 bp)
GATGTAAATTCATGGCTTAAACACA
LOC_Os02g52830
Target Sequence 
GGCCCTTCTGTTCAAGCACTTTGGGACGTGCCTCTACTTCGACAGCTTCTACAAAGGCCATGTGACGGAGGAGGAGCCGA
ACAAGAACTACTTCTCGCTGCTGACGGTGGTGCCCAAGTACGCGAACGCGGCGTGGGAGCTCGCCCGGAGCTTCGTCATC
GGCTATGTCGACGGGCCGGAGTACGGTGAGGGTTGGCTGATGAGGATCGCCAGGGCCGCCGGGCTGCTGCTGCCGGGCCT
GCCGCCGCACGCGCCGCAGGACTACGTGAACGCCACCAGGCTCGGCGCCGCCTCGCTCGAGCCGCTCCGATAGGTAGCTC
GTCGGCGTCGGCGCCAACACATTTAGTAGTAAACTAGTAACAGGCTTGTGATTCATGATTCATGAAGTGGAATGCAACAT
NCACAGTGTAAATTCATGCCTTAAACACAATAATATGATTCATAAAGTGGAATGCAGCATTCATTTTCAGAATTCTTGAA
CAAGACAGTGTAGATTCGATGTAAATTCATGGCTTAAACACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51956.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis