Browse Element(s) Details


Os.8496.1.S1_at

Description gb:AB016065.1
DB_XREF= gi:3318614
TID=Os.8496.1
CNT=34
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8496 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for mitochondrial phosphate transporter, complete cds.
PROD=mitochondrial phosphate transporter
FL= gb:AB016065.1 gb:AK069611.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5286011/11Phosphate carrier protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52820Os.51673.1.S1_at11/112+32289451..32292822expressed protein
LOC_Os02g52830Os.51956.1.S1_at11/112+32294664..32298113Lipase family protein, expressed
LOC_Os02g52840Os.53448.1.S1_at10/112+32304930..32306315Flavonol synthase/flavanone 3-hydroxylase, putative, expressed
LOC_Os02g52850Os.53369.1.S1_at11/112+32307084..32310123D-mannose binding lectin family protein, expressed
LOC_Os02g52860Os.8496.1.S1_at11/112+32313510..32317463Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os02g52870OsAffx.12618.1.S1_at10/112+32318605..32320085Zinc finger, C3HC4 type family protein
LOC_Os02g52880Os.10895.1.S1_at11/112+32320298..32324247expressed protein
LOC_Os02g52890OsAffx.3050.1.S1_at11/112+32329755..32330054hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005476molecular_functioncarnitine:acyl carnitine antiporter activity
GO:0005488molecular_functionbinding
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8496.1.S1_at--29--10871Chr02:32313896..32314016 (25 bp)
TTGGACTTCCAACAACCGGTGGTGT
LOC_Os02g52860
Os.8496.1.S1_at--5--9551Chr02:32313781..32313805 (25 bp)
TCTTTGTTGTGGCTGGAATTGTATC
LOC_Os02g52860
Os.8496.1.S1_at--324--2071Chr02:32313752..32313776 (25 bp)
ACTTGAGTTTAGCACCTAAATCTTA
LOC_Os02g52860
Os.8496.1.S1_at--550--3131Chr02:32313728..32313752 (25 bp)
AATTTTAGTGGATGATTCTTGTGTC
LOC_Os02g52860
Os.8496.1.S1_at--28--8571Chr02:32313720..32313744 (25 bp)
TGGATGATTCTTGTGTCATCCTTTT
LOC_Os02g52860
Os.8496.1.S1_at--758--331Chr02:32313623..32313647 (25 bp)
ATAAATTTTTGGACAGCAAGGCTGT
LOC_Os02g52860
Os.8496.1.S1_at--703--5171Chr02:32313608..32313632 (25 bp)
GCAAGGCTGTTAGAGCTCAGGTTTT
LOC_Os02g52860
Os.8496.1.S1_at--375--6771Chr02:32313600..32313624 (25 bp)
GTTAGAGCTCAGGTTTTGGCATCAC
LOC_Os02g52860
Os.8496.1.S1_at--755--6791Chr02:32313588..32313612 (25 bp)
GTTTTGGCATCACCTGTACTGAGGA
LOC_Os02g52860
Os.8496.1.S1_at--168--7011Chr02:32313573..32313597 (25 bp)
GTACTGAGGAATACTCACATCTTTG
LOC_Os02g52860
Os.8496.1.S1_at--476--931Chr02:32313567..32313591 (25 bp)
AGGAATACTCACATCTTTGTGTTCC
LOC_Os02g52860
Target Sequence 
TTGGACTTCCAACAACCGGTGGTGTTACGCCCGCGCCCGGTGCAGCAGAGAAAGCATTGCAAGCCAGTGCTTGATTCTTA
TGCAGAGATAATGGCGATGTATTCCTGAAGATCCATCTTTGTTGTGGCTGGAATTGTATCAATTACTTGAGTTTAGCACC
TAAATCTTAATTTTAGTGGATGATTCTTGTGTCATCCTTTTGATGAGAGGAACTCATTAATCAGGTGAAGTAGGTCTTTT
TTGCCCCCGGGAAAGTTTGATGCTTGATACATAATAAATTTTTGGACAGCAAGGCTGTTAGAGCTCAGGTTTTGGCATCA
CCTGTACTGAGGAATACTCACATCTTTGTGTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8496.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis