Browse Element(s) Details


OsAffx.3050.1.S1_at

Description tigr:9630.m05222
TID=OsAffx.3050.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5289011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52840Os.53448.1.S1_at10/112+32304930..32306315Flavonol synthase/flavanone 3-hydroxylase, putative, expressed
LOC_Os02g52850Os.53369.1.S1_at11/112+32307084..32310123D-mannose binding lectin family protein, expressed
LOC_Os02g52860Os.8496.1.S1_at11/112+32313510..32317463Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os02g52870OsAffx.12618.1.S1_at10/112+32318605..32320085Zinc finger, C3HC4 type family protein
LOC_Os02g52880Os.10895.1.S1_at11/112+32320298..32324247expressed protein
LOC_Os02g52890OsAffx.3050.1.S1_at11/112+32329755..32330054hypothetical protein
LOC_Os02g52900Os.49310.1.S1_at11/112+32343223..32347038expressed protein
LOC_Os02g52900Os.48084.1.S1_at11/112+32343223..32347038expressed protein
LOC_Os02g52910Os.54736.1.S1_at11/112+32344119..32346794hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g52920Os.26016.1.S1_at11/112+32347379..32350582emp24/gp25L/p24 family protein, expressed
LOC_Os02g52920Os.37785.1.S1_at11/112+32347379..32350582emp24/gp25L/p24 family protein, expressed
LOC_Os02g52920Os.18881.1.S1_at1/112+32347379..32350582emp24/gp25L/p24 family protein, expressed
LOC_Os02g52930Os.53570.1.S1_at11/112+32353324..32356112nodulin MtN21 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3050.1.S1_at--1116--9371Chr02:32330000..32330024 (25 bp)
TCGTCTTACATTGTCCACAACTTGA
LOC_Os02g52890
OsAffx.3050.1.S1_at--593--3291Chr02:32329985..32330009 (25 bp)
CACAACTTGATGTCGGAGCACTTCA
LOC_Os02g52890
OsAffx.3050.1.S1_at--258--5951Chr02:32329970..32329994 (25 bp)
GAGCACTTCACCACCTGGTATTGCC
LOC_Os02g52890
OsAffx.3050.1.S1_at--941--3891Chr02:32329956..32329980 (25 bp)
CTGGTATTGCCCCATATGGTTTAAA
LOC_Os02g52890
OsAffx.3050.1.S1_at--719--2331Chr02:32329934..32329958 (25 bp)
AAAGACCGGTGTCACTTTGTCTGCT
LOC_Os02g52890
OsAffx.3050.1.S1_at--314--8731Chr02:32329917..32329941 (25 bp)
TGTCTGCTTCCTTTCAACTGGATAT
LOC_Os02g52890
OsAffx.3050.1.S1_at--116--6251Chr02:32329892..32329916 (25 bp)
GATGGTTTCAAGCATACCCCTCCCT
LOC_Os02g52890
OsAffx.3050.1.S1_at--778--4291Chr02:32329870..32329894 (25 bp)
CCTACCCCTTGAATCTACTGATTGT
LOC_Os02g52890
OsAffx.3050.1.S1_at--694--5251Chr02:32329860..32329884 (25 bp)
GAATCTACTGATTGTTTGCCGGAAC
LOC_Os02g52890
OsAffx.3050.1.S1_at--192--9191Chr02:32329844..32329868 (25 bp)
TGCCGGAACCAGCAACCACATGGAA
LOC_Os02g52890
OsAffx.3050.1.S1_at--717--6351Chr02:32329788..32329812 (25 bp)
GATCCAGCAACTGCAAGCTACGCAT
LOC_Os02g52890
Target Sequence 
TCGTCTTACATTGTCCACAACTTGATGTCGGAGCACTTCACCACCTGGTATTGCCCCATATGGTTTAAAGACCGGTGTCA
CTTTGTCTGCTTCCTTTCAACTGGATATGATGGTTTCAAGCATACCCCTCCCTACCCCTTGAATCTACTGATTGTTTGCC
GGAACCAGCAACCACATGGAACTTCGCCACCCGGGCTGCCTCTAGGCGACAAGATCCAGCAACTGCAAGCTACGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3050.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis