Browse Element(s) Details


Os.54736.1.S1_at

Description gb:AK106634.1
DB_XREF= gi:32991843
TID=Os.54736.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54736 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-D06, full insert sequence.
FL= gb:AK106634.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5291011/11hydroxyproline-rich glycoprotein family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52870OsAffx.12618.1.S1_at10/112+32318605..32320085Zinc finger, C3HC4 type family protein
LOC_Os02g52880Os.10895.1.S1_at11/112+32320298..32324247expressed protein
LOC_Os02g52890OsAffx.3050.1.S1_at11/112+32329755..32330054hypothetical protein
LOC_Os02g52900Os.49310.1.S1_at11/112+32343223..32347038expressed protein
LOC_Os02g52900Os.48084.1.S1_at11/112+32343223..32347038expressed protein
LOC_Os02g52910Os.54736.1.S1_at11/112+32344119..32346794hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g52920Os.26016.1.S1_at11/112+32347379..32350582emp24/gp25L/p24 family protein, expressed
LOC_Os02g52920Os.37785.1.S1_at11/112+32347379..32350582emp24/gp25L/p24 family protein, expressed
LOC_Os02g52920Os.18881.1.S1_at1/112+32347379..32350582emp24/gp25L/p24 family protein, expressed
LOC_Os02g52930Os.53570.1.S1_at11/112+32353324..32356112nodulin MtN21 family protein, putative, expressed
LOC_Os02g52940Os.11101.1.S1_a_at11/112+32369046..32372340inorganic pyrophosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54736.1.S1_at--473--10111Chr02:32345001..32345025 (25 bp)
TATGGAAGTTTTTCATGCCCGGCTT
LOC_Os02g52910
Os.54736.1.S1_at--135--2571Chr02:32344963..32344987 (25 bp)
AACTGTCTCTGTACATCGCAGGTTA
LOC_Os02g52910
Os.54736.1.S1_at--136--7891Chr02:32344943..32344967 (25 bp)
GGTTATCGACGATATCTCCCATGAT
LOC_Os02g52910
Os.54736.1.S1_at--290--471Chr02:32344930..32344954 (25 bp)
ATCTCCCATGATGGTACCACCAGAA
LOC_Os02g52910
Os.54736.1.S1_at--582--5531Chr02:32344864..32344888 (25 bp)
GAAAAATCGCTCTCCACTTGCAAAA
LOC_Os02g52910
Os.54736.1.S1_at--476--10731Chr02:32344847..32344871 (25 bp)
TTGCAAAACCAATGTCCCTTGTGCC
LOC_Os02g52910
Os.54736.1.S1_at--739--10791Chr02:32344413..32344437 (25 bp)
TTGTCAGTTACATCCAAGGTTGCAT
LOC_Os02g52910
Os.54736.1.S1_at--466--2851Chr02:32344387..32344411 (25 bp)
AAGTGCTTCTGAGCGAAAGTCCTAC
LOC_Os02g52910
Os.54736.1.S1_at--544--8511Chr02:32344247..32344271 (25 bp)
TGGAAAACCTCCAGCTACGGGTGGT
LOC_Os02g52910
Os.54736.1.S1_at--569--6051Chr02:32344195..32344219 (25 bp)
GAGATTTTTCATCCAAACAGCTTGT
LOC_Os02g52910
Os.54736.1.S1_at--379--6591Chr02:32344150..32344174 (25 bp)
GATTGCTCTTGTCCCAAAGAACCAT
LOC_Os02g52910
Target Sequence 
TATGGAAGTTTTTCATGCCCGGCTTTGGAAAGAAGAAAAACTGTCTCTGTACATCGCAGGTTATCGACGATATCTCCCAT
GATGGTACCACCAGAAATACCGACGAGGTTTGATAGTTGGAGTGTACACACTGACAGGAAAAATCGCTCTCCACTTGCAA
AACCAATGTCCCTTGTGCCAGCATCCCCATCAAAATAATTGATTCTACACTTGTTCCTTCAATGTGATTTTGTCAGTTAC
ATCCAAGGTTGCATGAAGTGCTTCTGAGCGAAAGTCCTACACTAATGCAGAGTAATGCTCAAGAAATCTTAACCAAGTGT
ATATATGAAATGGTTAAGTTCTCTTTTTGACCAAAAACACTGTAGGGGAAATGGTTAAGTTCTTTAGCAGTAAGATGGAA
AACCTCCAGCTACGGGTGGTTAACCATAAGTTTCTTTAATGCGTTCAGAGATTTTTCATCCAAACAGCTTGTGCATTTGC
ATGAGTTATATAGATTGCTCTTGTCCCAAAGAACCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54736.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis