Browse Element(s) Details


Os.11101.1.S1_a_at

Description gb:AK059725.1
DB_XREF= gi:32969743
TID=Os.11101.1
CNT=25
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.11101 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-311-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-201-B08, full insert sequence.
FL= gb:AK104659.1 gb:AK099120.1 gb:AK098996.1 gb:AK059725.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5294011/11inorganic pyrophosphatase family protein, expressed
LOC_Os07g345891/11Protein translation factor SUI1 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52900Os.49310.1.S1_at11/112+32343223..32347038expressed protein
LOC_Os02g52900Os.48084.1.S1_at11/112+32343223..32347038expressed protein
LOC_Os02g52910Os.54736.1.S1_at11/112+32344119..32346794hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g52920Os.26016.1.S1_at11/112+32347379..32350582emp24/gp25L/p24 family protein, expressed
LOC_Os02g52920Os.37785.1.S1_at11/112+32347379..32350582emp24/gp25L/p24 family protein, expressed
LOC_Os02g52920Os.18881.1.S1_at1/112+32347379..32350582emp24/gp25L/p24 family protein, expressed
LOC_Os02g52930Os.53570.1.S1_at11/112+32353324..32356112nodulin MtN21 family protein, putative, expressed
LOC_Os02g52940Os.11101.1.S1_a_at11/112+32369046..32372340inorganic pyrophosphatase family protein, expressed
LOC_Os02g52950OsAffx.24840.1.S1_at11/112+32372352..32375558expressed protein
LOC_Os02g52960OsAffx.3051.1.S1_at11/112+32379001..32390223PHD-finger family protein, expressed
LOC_Os02g52960Os.16651.1.S1_at11/112+32379001..32390223PHD-finger family protein, expressed
LOC_Os02g52960Os.16651.1.S2_at10/112+32379001..32390223PHD-finger family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0008152biological_processmetabolism
GO:0016020cellular_componentmembrane
GO:0003743molecular_functiontranslation initiation factor activity
GO:0016462molecular_functionpyrophosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11101.1.S1_a_at--333--2431Chr02:32371186..32371210 (25 bp)
AAAACCGTTGGCAGCTTTAGCAATG
LOC_Os02g52940
Os.11101.1.S1_a_at--1055--31Chr02:32371238..32371262 (25 bp)
ATTGTGGCTATTTCTTTGGATGATC
LOC_Os02g52940
Os.11101.1.S1_a_at--390--6371Chr02:32371259..32371283 (25 bp)
GATCCTAAAGCATCTCTTGTGAATG
LOC_Os02g52940
Os.11101.1.S1_a_at--656--10291Chr02:32371307..32371791 (25 bp)
TTTCCGGGAACATTGACTGCCATCA
LOC_Os02g52940
Os.11101.1.S1_a_at--236--311Chr02:32371815..32371839 (25 bp)
ATACCAGACGGTAAGCCTGCAAACA
LOC_Os02g52940
Os.11101.1.S1_a_at--386--5231Chr02:32372008..32372032 (25 bp)
GAATATCCCTGCTGGAGAGCTCTCA
LOC_Os02g52940
Os.11101.1.S1_a_at--626--1371Chr02:32372023..32372047 (25 bp)
AGAGCTCTCACTAGCCTAATCTTGT
LOC_Os02g52940
Os.11101.1.S1_a_at--85--5431Chr02:32372054..32372078 (25 bp)
GAAGCCATCAGATTCTTTTGGTCAT
LOC_Os02g52940
Os.11101.1.S1_a_at--907--9791Chr02:32372108..32372132 (25 bp)
TAAGCATGCTGCTTCTTGCGAACTC
LOC_Os02g52940
Os.11101.1.S1_a_at--380--4911Chr02:32372118..32372142 (25 bp)
GCTTCTTGCGAACTCTTTGGTGACC
LOC_Os02g52940
Os.11101.1.S1_a_at--1134--8292Chr02:32372177..32372201 (25 bp)
GGCTTTCTGAGCTAGTTTTTCTAAG
LOC_Os02g52940
Target Sequence 
AAAACCGTTGGCAGCTTTAGCAATGATTGATGAGGGTGAGCTTGACTGGAAAATTGTGGCTATTTCTTTGGATGATCCTA
AAGCATCTCTTGTGAATGATGTGGATGATGTTGAGAAGCATTTTCCGGGAACATTGACTGCCATCAGAGACTGGTTCAGG
GACTACAAGATACCAGACGGTAAGCCTGCAAACAGATTTGGTCTGGGCAACAAACCCACAAGCAAGGAATATGCTCTGAA
GGTCATAGAAGAAACCAACGAATCATGGGAGAAATTGGTGAAAAGGAATATCCCTGCTGGAGAGCTCTCACTAGCCTAAT
CTTGTCCATGAGAAGCCATCAGATTCTTTTGGTCATTTACCTAAGCATGTTGTTTTCATAAGCTATAAGCATGCTGCTTC
TTGCGAACTCTTTGGTGACCTGTGTGCAACAGGAACAGCTTGTGGAGTGAATAAGGCTTTCTGAGCTAGTTTTTCTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11101.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis