Browse Element(s) Details


Os.16651.1.S1_at

Description gb:AK063192.1
DB_XREF= gi:32973210
TID=Os.16651.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16651 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-112-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-B11, full insert sequence.
FL= gb:AK063192.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5296011/11PHD-finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52930Os.53570.1.S1_at11/112+32353324..32356112nodulin MtN21 family protein, putative, expressed
LOC_Os02g52940Os.11101.1.S1_a_at11/112+32369046..32372340inorganic pyrophosphatase family protein, expressed
LOC_Os02g52950OsAffx.24840.1.S1_at11/112+32372352..32375558expressed protein
LOC_Os02g52960OsAffx.3051.1.S1_at11/112+32379001..32390223PHD-finger family protein, expressed
LOC_Os02g52960Os.16651.1.S1_at11/112+32379001..32390223PHD-finger family protein, expressed
LOC_Os02g52960Os.16651.1.S2_at10/112+32379001..32390223PHD-finger family protein, expressed
LOC_Os02g52970OsAffx.22699.1.S1_x_at2/112+32399665..32404759retrotransposon protein, putative, unclassified
LOC_Os02g52970OsAffx.8279.1.S1_at1/112+32399665..32404759retrotransposon protein, putative, unclassified
LOC_Os02g52980NANA2+32405671..32408867hypothetical protein
LOC_Os02g52990Os.49319.1.S1_at11/112+32412624..32413492Auxin responsive protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16651.1.S1_at--593--4411Chr02:32389262..32389286 (25 bp)
GCCAGAAGACGTTTGTTTCCTTGGT
LOC_Os02g52960
Os.16651.1.S1_at--555--10291Chr02:32389277..32389301 (25 bp)
TTTCCTTGGTCTTCACAGCCAGAAA
LOC_Os02g52960
Os.16651.1.S1_at--722--3371Chr02:32389292..32389316 (25 bp)
CAGCCAGAAAGTACAAGCGTCAAGT
LOC_Os02g52960
Os.16651.1.S1_at--485--8451Chr02:32389322..32389346 (25 bp)
TGGCCAGTCTTTTGCTGCTACAAAG
LOC_Os02g52960
Os.16651.1.S1_at--440--10271Chr02:32389332..32389356 (25 bp)
TTTGCTGCTACAAAGGGTTCCAAGC
LOC_Os02g52960
Os.16651.1.S1_at--443--7911Chr02:32389347..32389371 (25 bp)
GGTTCCAAGCAAACGATGATCCAAT
LOC_Os02g52960
Os.16651.1.S1_at--1145--5271Chr02:32389432..32389456 (25 bp)
GAATGTATGGTGTGGGATCTTTACC
LOC_Os02g52960
Os.16651.1.S1_at--359--431Chr02:32389448..32389472 (25 bp)
ATCTTTACCAGAAATCTTGCTCCGC
LOC_Os02g52960
Os.16651.1.S1_at--803--1011Chr02:32389476..32389500 (25 bp)
AGGTCGCTCGGGTGAACGGCAACAT
LOC_Os02g52960
Os.16651.1.S1_at--86--5151Chr02:32389494..32389518 (25 bp)
GCAACATGGGTGGATTTACCTGTTT
LOC_Os02g52960
Os.16651.1.S1_at--1004--9851Chr02:32389526..32389550 (25 bp)
TACAAAGATGCCTTTCTCGCCTGTA
LOC_Os02g52960
Target Sequence 
GCCAGAAGACGTTTGTTTCCTTGGTCTTCACAGCCAGAAAGTACAAGCGTCAAGTGGGGCTGGCCAGTCTTTTGCTGCTA
CAAAGGGTTCCAAGCAAACGATGATCCAATTGGGCTGAAGTTGTAGAACGGTGCAAACTGAGTTAATGTGAACGAGAGAA
CGAAACAGATGAATGTATGGTGTGGGATCTTTACCAGAAATCTTGCTCCGCCTCAGGTCGCTCGGGTGAACGGCAACATG
GGTGGATTTACCTGTTTGAGGATATACAAAGATGCCTTTCTCGCCTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16651.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis