Browse Element(s) Details


OsAffx.3051.1.S1_at

Description tigr:9630.m05229
TID=OsAffx.3051.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to F28K19.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5296011/11PHD-finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52930Os.53570.1.S1_at11/112+32353324..32356112nodulin MtN21 family protein, putative, expressed
LOC_Os02g52940Os.11101.1.S1_a_at11/112+32369046..32372340inorganic pyrophosphatase family protein, expressed
LOC_Os02g52950OsAffx.24840.1.S1_at11/112+32372352..32375558expressed protein
LOC_Os02g52960OsAffx.3051.1.S1_at11/112+32379001..32390223PHD-finger family protein, expressed
LOC_Os02g52960Os.16651.1.S1_at11/112+32379001..32390223PHD-finger family protein, expressed
LOC_Os02g52960Os.16651.1.S2_at10/112+32379001..32390223PHD-finger family protein, expressed
LOC_Os02g52970OsAffx.22699.1.S1_x_at2/112+32399665..32404759retrotransposon protein, putative, unclassified
LOC_Os02g52970OsAffx.8279.1.S1_at1/112+32399665..32404759retrotransposon protein, putative, unclassified
LOC_Os02g52980NANA2+32405671..32408867hypothetical protein
LOC_Os02g52990Os.49319.1.S1_at11/112+32412624..32413492Auxin responsive protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3051.1.S1_at--1133--8151Chr02:32387980..32388004 (25 bp)
GGAAAAATTGCGACTCTTGTGCGAG
LOC_Os02g52960
OsAffx.3051.1.S1_at--583--9151Chr02:32387988..32388012 (25 bp)
TGCGACTCTTGTGCGAGAGGATAAT
LOC_Os02g52960
OsAffx.3051.1.S1_at--37--2691Chr02:32388611..32388634 (24 bp)
AAGCGTGAGAGGGTTCTATGTGATC
LOC_Os02g52960
OsAffx.3051.1.S1_at--84--6031Chr02:32388616..32388640 (25 bp)
GAGAGGGTTCTATGTGATCATGACA
LOC_Os02g52960
OsAffx.3051.1.S1_at--1085--6411Chr02:32388631..32388655 (25 bp)
GATCATGACATACTTGCCAAAACGA
LOC_Os02g52960
OsAffx.3051.1.S1_at--127--9211Chr02:32388645..32388669 (25 bp)
TGCCAAAACGAAGGATACTCTTGTT
LOC_Os02g52960
OsAffx.3051.1.S1_at--1088--8771Chr02:32388666..32388690 (25 bp)
TGTTTTCTCCTACCTTACACATGGA
LOC_Os02g52960
OsAffx.3051.1.S1_at--628--1731Chr02:32388677..32388701 (25 bp)
ACCTTACACATGGAGCAAGTTCAGA
LOC_Os02g52960
OsAffx.3051.1.S1_at--1031--9631Chr02:32388697..32388721 (25 bp)
TCAGAATCTGCCACTACTTCTGTTA
LOC_Os02g52960
OsAffx.3051.1.S1_at--1121--6811Chr02:32388879..32388903 (25 bp)
GTTTAGTGAAAGAGGATCACTTGCT
LOC_Os02g52960
OsAffx.3051.1.S1_at--1141--3431Chr02:32388926..32388950 (25 bp)
CAGTTACCTCACAGAAATTGGAAGC
LOC_Os02g52960
Target Sequence 
GGAAAAATTGCGACTCTTGTGCGAGAGGATAATTAAGAGAGAAAAGGTGAAGCGTGAGAGGGTTCTATGTGATCATGACA
TACTTGCCAAAACGAAGGATACTCTTGTTTTCTCCTACCTTACACATGGAGCAAGTTCAGAATCTGCCACTACTTCTGTT
AACAACAAATCATACAGTGGAACCATGCAAAGGTCTGATGATGTCACAGTGGACAGTACTATTTCTGGGAAAAAGGCGAT
CAGGTTTTCTCTGAATAACAGGGATGCTGAGATAAACACAGCTGATAGCTCAAGGACACTGATATCGTTCAAACGGAAGT
TTAGTGAAAGAGGATCACTTGCTGGTAAGCAGCTCCCGCGAAGACCAGTTACCTCACAGAAATTGGAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3051.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis