Browse Element(s) Details


Os.16651.1.S2_at

Description gb:AU165038
DB_XREF= gi:11414245
DB_XREF=AU165038
CLONE=Osia28
TID=Os.16651.1
CNT=5
FEA=FLmRNA
TIER=ConsEnd
STK=0
UG=Os.16651 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-112-B11, full insert sequence
FL= gb:AK063192.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5296010/11PHD-finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52930Os.53570.1.S1_at11/112+32353324..32356112nodulin MtN21 family protein, putative, expressed
LOC_Os02g52940Os.11101.1.S1_a_at11/112+32369046..32372340inorganic pyrophosphatase family protein, expressed
LOC_Os02g52950OsAffx.24840.1.S1_at11/112+32372352..32375558expressed protein
LOC_Os02g52960OsAffx.3051.1.S1_at11/112+32379001..32390223PHD-finger family protein, expressed
LOC_Os02g52960Os.16651.1.S1_at11/112+32379001..32390223PHD-finger family protein, expressed
LOC_Os02g52960Os.16651.1.S2_at10/112+32379001..32390223PHD-finger family protein, expressed
LOC_Os02g52970OsAffx.22699.1.S1_x_at2/112+32399665..32404759retrotransposon protein, putative, unclassified
LOC_Os02g52970OsAffx.8279.1.S1_at1/112+32399665..32404759retrotransposon protein, putative, unclassified
LOC_Os02g52980NANA2+32405671..32408867hypothetical protein
LOC_Os02g52990Os.49319.1.S1_at11/112+32412624..32413492Auxin responsive protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16651.1.S2_at--407--1711Chr02:32389656..32389680 (25 bp)
ACCACTCTTTGTTGGGATTACAAGA
LOC_Os02g52960
Os.16651.1.S2_at--430--3611Chr02:32389693..32389717 (25 bp)
CATTGGTGCGAGTCAGGGCCACCGC
LOC_Os02g52960
Os.16651.1.S2_at--946--4731Chr02:32389721..32389745 (25 bp)
GCTGATAATCGCTCAAGGGATTGGA
LOC_Os02g52960
Os.16651.1.S2_at--1026--111Chr02:32389778..32389802 (25 bp)
ATTCATTGCTGCCTGTTGGGATGGA
LOC_Os02g52960
Os.16651.1.S2_at--662--3671Chr02:32389912..32389936 (25 bp)
CTTTTTTATGTTGATTGGTTGCGGG
LOC_Os02g52960
Os.16651.1.S2_at--120--3671Chr02:32390014..32390038 (25 bp)
CTTAGTCTGGTGTGGTAGTCAGCTT
LOC_Os02g52960
Os.16651.1.S2_at--715--7851Chr02:32390027..32390051 (25 bp)
GGTAGTCAGCTTTTTTATATGTTAG
LOC_Os02g52960
Os.16651.1.S2_at--891--8891Chr02:32390072..32390096 (25 bp)
TGAGACAGGTGTTTTCCTCTTGCCG
LOC_Os02g52960
Os.16651.1.S2_at--406--9531Chr02:32390089..32390113 (25 bp)
TCTTGCCGTCCAGATTTGTAACTTG
LOC_Os02g52960
Os.16651.1.S2_at--157--6771NONE
GTTAATAATCTTTCCTGCCATTGGG
NONE
Os.16651.1.S2_at--664--4431Chr02:32390132..32390155 (24 bp)
GCCATTGGGAGCCACACAGACGATG
LOC_Os02g52960
Target Sequence 
ACCACTCTTTGTTGGGATTACAAGAAAAGAAATGGTCCATTGGTGCGAGTCAGGGCCACCGCGGGGCTGATAATCGCTCA
AGGGATTGGAGACAGGCAATTGGTAATGGCTAATGAGGTCTGATTCATTGCTGCCTGTTGGGATGGAGACGGCGAAAGCA
GTTGAAATGGAACTGTTGGTTTACAGCAGCCATTTTAATGGTGAAGTGGTGATAGCTGGTATAGTTTTAGATACAGCAGT
ACAGTCTGACCCTGTTCTTTTTTATGTTGATTGGTTGCGGGTGACTTGCTCGGAGCTTGTTAACAACCATTTAATATTTC
AGCAAACAAGAGGTTTTTGTTTTAATGACTAGTAATAACTTAGTCTGGTGTGGTAGTCAGCTTTTTTATATGTTAGATGC
AGATAATTTTTTGGTCTGAGACAGGTGTTTTCCTCTTGCCGTCCAGATTTGTAACTTGGGTTAATAATCTTTCCTGCCAT
TGGGAGCCACACAGACGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16651.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis