Browse Element(s) Details


Os.53570.1.S1_at

Description gb:AK073339.1
DB_XREF= gi:32983362
TID=Os.53570.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53570 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033030K15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033030K15, full insert sequence.
FL= gb:AK073339.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5293011/11nodulin MtN21 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52890OsAffx.3050.1.S1_at11/112+32329755..32330054hypothetical protein
LOC_Os02g52900Os.49310.1.S1_at11/112+32343223..32347038expressed protein
LOC_Os02g52900Os.48084.1.S1_at11/112+32343223..32347038expressed protein
LOC_Os02g52910Os.54736.1.S1_at11/112+32344119..32346794hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g52920Os.26016.1.S1_at11/112+32347379..32350582emp24/gp25L/p24 family protein, expressed
LOC_Os02g52920Os.37785.1.S1_at11/112+32347379..32350582emp24/gp25L/p24 family protein, expressed
LOC_Os02g52920Os.18881.1.S1_at1/112+32347379..32350582emp24/gp25L/p24 family protein, expressed
LOC_Os02g52930Os.53570.1.S1_at11/112+32353324..32356112nodulin MtN21 family protein, putative, expressed
LOC_Os02g52940Os.11101.1.S1_a_at11/112+32369046..32372340inorganic pyrophosphatase family protein, expressed
LOC_Os02g52950OsAffx.24840.1.S1_at11/112+32372352..32375558expressed protein
LOC_Os02g52960OsAffx.3051.1.S1_at11/112+32379001..32390223PHD-finger family protein, expressed
LOC_Os02g52960Os.16651.1.S1_at11/112+32379001..32390223PHD-finger family protein, expressed
LOC_Os02g52960Os.16651.1.S2_at10/112+32379001..32390223PHD-finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53570.1.S1_at--763--1091Chr02:32353972..32353996 (25 bp)
AGTGTTCGTGACAGCATTCAACCCG
LOC_Os02g52930
Os.53570.1.S1_at--954--791Chr02:32353923..32353947 (25 bp)
ATGGGCTCCATCATTCTCAAGGAAG
LOC_Os02g52930
Os.53570.1.S1_at--578--371Chr02:32353759..32353920 (25 bp)
ATCAACCTTGGAAGCGTGATCGGCG
LOC_Os02g52930
Os.53570.1.S1_at--171--7411Chr02:32353723..32353747 (25 bp)
GTGATAGGGCTGTACGCGCTGATCT
LOC_Os02g52930
Os.53570.1.S1_at--280--2331Chr02:32353681..32353705 (25 bp)
AAAGTCGAGCAGACAGACGCCGGCG
LOC_Os02g52930
Os.53570.1.S1_at--721--1591Chr02:32353623..32353647 (25 bp)
AGCTGCCATTGACGGCGGTGCCCAA
LOC_Os02g52930
Os.53570.1.S1_at--61--8451Chr02:32353570..32353594 (25 bp)
GGCCATGTCTACGACGTCGAGACGC
LOC_Os02g52930
Os.53570.1.S1_at--211--8391Chr02:32353538..32353562 (25 bp)
GGCGAACGGGCACTACTAGCCTAAG
LOC_Os02g52930
Os.53570.1.S1_at--1151--9251Chr02:32353491..32353515 (25 bp)
TCCTCGGCAGTCCATTGTAAGCTAG
LOC_Os02g52930
Os.53570.1.S1_at--61--7031Chr02:32353475..32353499 (25 bp)
GTAAGCTAGTTGTGGTTCGATCGAC
LOC_Os02g52930
Os.53570.1.S1_at--287--5891Chr02:32353436..32353460 (25 bp)
GAGCGTGACACGATTTCTTCTTCTT
LOC_Os02g52930
Target Sequence 
AGTGTTCGTGACAGCATTCAACCCGCTCTGCATGATCATCACCGCCATCATGGGCTCCATCATTCTCAAGGAAGAAATCA
ACCTTGGAAGCGTGATCGGCGCGGTGATCATCGTGATAGGGCTGTACGCGCTGATCTGGGGCAAGGGCGCCGACAAAGTC
GAGCAGACAGACGCCGGCGCGGCGGCGGCGGGCAGCAACAAGGGCGGCGGCGAGCTGCCATTGACGGCGGTGCCCAACGG
CCACGGCAGCAAGCACGGCAACGGCGGCCATGTCTACGACGTCGAGACGCCGCCGGCGGCGAACGGGCACTACTAGCCTA
AGCACATGCAGCAGCAGTCCGTCATCCTCGGCAGTCCATTGTAAGCTAGTTGTGGTTCGATCGACCATCGATCGATCGAG
AGCGTGACACGATTTCTTCTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53570.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis