Browse Element(s) Details


Os.18881.1.S1_at

Description gb:AK063607.1
DB_XREF= gi:32973625
TID=Os.18881.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18881 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-C11, full insert sequence.
FL= gb:AK063607.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3770011/11Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os02g529201/11emp24/gp25L/p24 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37670NANA5+21963338..21963907hypothetical protein
LOC_Os05g37680OsAffx.4548.1.S1_at11/115+21964784..21965479transposon protein, putative, unclassified
LOC_Os05g37690Os.17042.1.S1_at11/115+21977725..21980654Coronatine-insensitive protein 1, putative, expressed
LOC_Os05g37690OsAffx.16860.1.S1_at1/115+21977725..21980654Coronatine-insensitive protein 1, putative, expressed
LOC_Os05g37700Os.18881.1.S1_at11/115+21985304..21989715Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os05g37700Os.7745.1.S1_at11/115+21985304..21989715Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os05g37700Os.23325.1.A1_at1/115+21985304..21989715Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os05g37710OsAffx.14998.1.S1_at10/115+21992483..21993153hypothetical protein
LOC_Os05g37720OsAffx.4549.1.S1_at10/115+21993561..21996895hypothetical protein
LOC_Os05g37730Os.18392.1.S1_at11/115+21998191..22000281MYB-like transcription factor DIVARICATA, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0006886biological_processintracellular protein transport
GO:0016020cellular_componentmembrane
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008320molecular_functionprotein carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18881.1.S1_at--1041--10511Chr05:21989220..21989244 (25 bp)
TTCAGGTCAAATCTTGGCCACTTCT
LOC_Os05g37700
Os.18881.1.S1_at--488--8451Chr05:21989235..21989259 (25 bp)
GGCCACTTCTGGCATATCATTATTG
LOC_Os05g37700
Os.18881.1.S1_at--1002--6191Chr05:21989323..21989347 (25 bp)
GAGGCATAGATCTTACTTGGTTAAC
LOC_Os05g37700
Os.18881.1.S1_at--520--3551Chr05:21989347..21989371 (25 bp)
CATACTGAAGTTTGACTCCGGTTCT
LOC_Os05g37700
Os.18881.1.S1_at--521--1991Chr05:21989361..21989385 (25 bp)
ACTCCGGTTCTTGCTGTGATATTGA
LOC_Os05g37700
Os.18881.1.S1_at--938--51Chr05:21989381..21989405 (25 bp)
ATTGATGGCCTTTACCTGGAATGAC
LOC_Os05g37700
Os.18881.1.S1_at--913--8951Chr05:21989402..21989426 (25 bp)
TGACAGTGCCTCATGACTTGGGAAA
LOC_Os05g37700
Os.18881.1.S1_at--463--6211Chr05:21989428..21989452 (25 bp)
GAGGCTCAAATTTCTGCCTTGATAA
LOC_Os05g37700
Os.18881.1.S1_at--934--3012Chr05:21989511..21989535 (25 bp)
AATGCTTATGCTTGGATTCCTTTTG
LOC_Os05g37700
Os.18881.1.S1_at--477--7931Chr05:21989524..21989548 (25 bp)
GGATTCCTTTTGCTGCTATTATATA
LOC_Os05g37700
Os.18881.1.S1_at--750--7071Chr05:21989554..21989578 (25 bp)
GTAATTCGTTGCAATCCTTAAGTCA
LOC_Os05g37700
Target Sequence 
TTCAGGTCAAATCTTGGCCACTTCTGGCATATCATTATTGCTGTTTCATGGAAAATGTTATCAGCAACAGTGCTCCATGG
AATGATACTATTGCTGGAGATCGGAGGCATAGATCTTACTTGGTTAACATACTGAAGTTTGACTCCGGTTCTTGCTGTGA
TATTGATGGCCTTTACCTGGAATGACAGTGCCTCATGACTTGGGAAAGGAGGCTCAAATTTCTGCCTTGATAACACCCCN
CCCCCCTCTCTTATAAGTAATTATATGAAGCATTTGCATGTCAAGTTTCATAATGCTTATGCTTGGATTCCTTTTGCTGC
TATTATATAGTATAGTAATTCGTTGCAATCCTTAAGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18881.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis