Browse Element(s) Details


Os.23325.1.A1_at

Description gb:CA759263
DB_XREF= gi:25803302
DB_XREF=BR060005A10F02.ab1
CLONE=BR060005A10F02.ab1
TID=Os.23325.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.23325 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g377001/11Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37670NANA5+21963338..21963907hypothetical protein
LOC_Os05g37680OsAffx.4548.1.S1_at11/115+21964784..21965479transposon protein, putative, unclassified
LOC_Os05g37690Os.17042.1.S1_at11/115+21977725..21980654Coronatine-insensitive protein 1, putative, expressed
LOC_Os05g37690OsAffx.16860.1.S1_at1/115+21977725..21980654Coronatine-insensitive protein 1, putative, expressed
LOC_Os05g37700Os.18881.1.S1_at11/115+21985304..21989715Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os05g37700Os.7745.1.S1_at11/115+21985304..21989715Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os05g37700Os.23325.1.A1_at1/115+21985304..21989715Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os05g37710OsAffx.14998.1.S1_at10/115+21992483..21993153hypothetical protein
LOC_Os05g37720OsAffx.4549.1.S1_at10/115+21993561..21996895hypothetical protein
LOC_Os05g37730Os.18392.1.S1_at11/115+21998191..22000281MYB-like transcription factor DIVARICATA, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23325.1.A1_at--334--5371NONE
GAAGAATTACTATTGTCCACTTTAA
NONE
Os.23325.1.A1_at--570--10271NONE
TTACTATTGTCCACTTTAACCGGTG
NONE
Os.23325.1.A1_at--11--10211NONE
TATTGTCCACTTTAACCGGTGGGAT
NONE
Os.23325.1.A1_at--835--10491NONE
TTAACCGGTGGGATGCATACAGCTG
NONE
Os.23325.1.A1_at--588--8631Chr05:21987691..21987715 (25 bp)
TGGGATGCATACAGCTGGGAAGTAT
LOC_Os05g37700
Os.23325.1.A1_at--822--7611NONE
GGGAAGTATGACACCAGCGATTTTC
NONE
Os.23325.1.A1_at--537--10111NONE
TATGACACCAGCGATTTTCTTTTCC
NONE
Os.23325.1.A1_at--6--5651NONE
GACACCAGCGATTTTCTTTTCCTTT
NONE
Os.23325.1.A1_at--606--10671NONE
TTCCTTTGTAAGATGCATCACCCAT
NONE
Os.23325.1.A1_at--1057--7051NONE
GTAAGATGCATCACCCATCTATCCC
NONE
Os.23325.1.A1_at--1092--9671NONE
TCACCCATCTATCCCTTGAATTAGA
NONE
Target Sequence 
GAAGAATTACTATTGTCCACTTTAACCGGTGGGATGCATACAGCTGGGAAGTATGACACCAGCGATTTTCTTTTCCTTTG
TAAGATGCATCACCCATCTATCCCTTGAATTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23325.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis