Browse Element(s) Details


Os.26016.1.S1_at

Description gb:AK070007.1
DB_XREF= gi:32980031
TID=Os.26016.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26016 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023034G24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023034G24, full insert sequence.
FL= gb:AK070007.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5292011/11emp24/gp25L/p24 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52880Os.10895.1.S1_at11/112+32320298..32324247expressed protein
LOC_Os02g52890OsAffx.3050.1.S1_at11/112+32329755..32330054hypothetical protein
LOC_Os02g52900Os.49310.1.S1_at11/112+32343223..32347038expressed protein
LOC_Os02g52900Os.48084.1.S1_at11/112+32343223..32347038expressed protein
LOC_Os02g52910Os.54736.1.S1_at11/112+32344119..32346794hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g52920Os.26016.1.S1_at11/112+32347379..32350582emp24/gp25L/p24 family protein, expressed
LOC_Os02g52920Os.37785.1.S1_at11/112+32347379..32350582emp24/gp25L/p24 family protein, expressed
LOC_Os02g52920Os.18881.1.S1_at1/112+32347379..32350582emp24/gp25L/p24 family protein, expressed
LOC_Os02g52930Os.53570.1.S1_at11/112+32353324..32356112nodulin MtN21 family protein, putative, expressed
LOC_Os02g52940Os.11101.1.S1_a_at11/112+32369046..32372340inorganic pyrophosphatase family protein, expressed
LOC_Os02g52950OsAffx.24840.1.S1_at11/112+32372352..32375558expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0016020cellular_componentmembrane
GO:0008320molecular_functionprotein carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26016.1.S1_at--667--5591Chr02:32347532..32347556 (25 bp)
GAAATTCATCGTCTTATAATGGGAT
LOC_Os02g52920
Os.26016.1.S1_at--1149--9011Chr02:32347508..32347532 (25 bp)
TGCAAAAATTGTGGCTTATGTGGTA
LOC_Os02g52920
Os.26016.1.S1_at--128--10071Chr02:32347485..32347509 (25 bp)
TAGTGGGCGGTGGTTTTTCTTCCAT
LOC_Os02g52920
Os.26016.1.S1_at--32--4671Chr02:32347479..32347503 (25 bp)
GCGGTGGTTTTTCTTCCATTTGCTT
LOC_Os02g52920
Os.26016.1.S1_at--317--211Chr02:32347462..32347486 (25 bp)
ATTTGCTTTAGCTATTACAGATGTC
LOC_Os02g52920
Os.26016.1.S1_at--948--2131Chr02:32347446..32347470 (25 bp)
ACAGATGTCATGTAAGTGTCATAGT
LOC_Os02g52920
Os.26016.1.S1_at--363--7451Chr02:32347431..32347455 (25 bp)
GTGTCATAGTATGGTCCGATCCTTG
LOC_Os02g52920
Os.26016.1.S1_at--525--10111Chr02:32347422..32347446 (25 bp)
TATGGTCCGATCCTTGTACCAGTAA
LOC_Os02g52920
Os.26016.1.S1_at--874--3611Chr02:32347410..32347434 (25 bp)
CTTGTACCAGTAAACCGGCTTAGAT
LOC_Os02g52920
Os.26016.1.S1_at--94--2611Chr02:32347398..32347422 (25 bp)
AACCGGCTTAGATGGAAACACCGAT
LOC_Os02g52920
Os.26016.1.S1_at--153--2471Chr02:32347382..32347406 (25 bp)
AACACCGATATGAGAAGGCCAATTA
LOC_Os02g52920
Target Sequence 
GAAATTCATCGTCTTATAATGGGATGCAAAAATTGTGGCTTATGTGGTAGTGGGCGGTGGTTTTTCTTCCATTTGCTTTA
GCTATTACAGATGTCATGTAAGTGTCATAGTATGGTCCGATCCTTGTACCAGTAAACCGGCTTAGATGGAAACACCGATA
TGAGAAGGCCAATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26016.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis