Browse Element(s) Details


OsAffx.12618.1.S1_at

Description tigr:9630.m05218
TID=OsAffx.12618.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5287010/11Zinc finger, C3HC4 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52830Os.51956.1.S1_at11/112+32294664..32298113Lipase family protein, expressed
LOC_Os02g52840Os.53448.1.S1_at10/112+32304930..32306315Flavonol synthase/flavanone 3-hydroxylase, putative, expressed
LOC_Os02g52850Os.53369.1.S1_at11/112+32307084..32310123D-mannose binding lectin family protein, expressed
LOC_Os02g52860Os.8496.1.S1_at11/112+32313510..32317463Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os02g52870OsAffx.12618.1.S1_at10/112+32318605..32320085Zinc finger, C3HC4 type family protein
LOC_Os02g52880Os.10895.1.S1_at11/112+32320298..32324247expressed protein
LOC_Os02g52890OsAffx.3050.1.S1_at11/112+32329755..32330054hypothetical protein
LOC_Os02g52900Os.49310.1.S1_at11/112+32343223..32347038expressed protein
LOC_Os02g52900Os.48084.1.S1_at11/112+32343223..32347038expressed protein
LOC_Os02g52910Os.54736.1.S1_at11/112+32344119..32346794hydroxyproline-rich glycoprotein family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12618.1.S1_at--66--3931Chr02:32319035..32319059 (25 bp)
CGGCCATCGACCCTGGGAACTATTT
LOC_Os02g52870
OsAffx.12618.1.S1_at--1053--511Chr02:32319040..32319064 (25 bp)
ATCGACCCTGGGAACTATTTCAATG
LOC_Os02g52870
OsAffx.12618.1.S1_at--545--8171Chr02:32319050..32319074 (25 bp)
GGAACTATTTCAATGGGCCCAACCT
LOC_Os02g52870
OsAffx.12618.1.S1_at--543--2531Chr02:32319052..32319076 (25 bp)
AACTATTTCAATGGGCCCAACCTGA
LOC_Os02g52870
OsAffx.12618.1.S1_at--907--3711Chr02:32319082..32319106 (25 bp)
CTCATCGAGGAGCTAACCCAGAACG
LOC_Os02g52870
OsAffx.12618.1.S1_at--577--5891Chr02:32319091..32319115 (25 bp)
GAGCTAACCCAGAACGACCGGCCGG
LOC_Os02g52870
OsAffx.12618.1.S1_at--198--7171Chr02:32319316..32319340 (25 bp)
GTCTGCCGGTACCAGCTGCTGTCCT
LOC_Os02g52870
OsAffx.12618.1.S1_at--862--4491Chr02:32319422..32319446 (25 bp)
GCCGGGACAGGGAGCAGACGATCGT
LOC_Os02g52870
OsAffx.12618.1.S1_at--429--4311Chr02:32319458..32319482 (25 bp)
CCTTCTCGTGGATGTGGCCGCCGCG
LOC_Os02g52870
OsAffx.12618.1.S1_at--558--4091NONE
CGACGCCGGCGGTAGAATGTGTAAC
NONE
OsAffx.12618.1.S1_at--1077--5271Chr02:32320030..32320054 (25 bp)
GAATGTGTAACGACCATGGAAATTT
LOC_Os02g52870
Target Sequence 
CGGCCATCGACCCTGGGAACTATTTCAATGGGCCCAACCTGAACAACCTCATCGAGGAGCTAACCCAGAACGACCGGCCG
GGGCCGGCGCCCGCGCCGTCGTCGGCCATCGACTCGCTCCCGACGGTGCAGATCACCGGAGCGCACCTGTCCGACGGCTC
GCAGTGCCCCGTCTGCAAGGAGGACTTCGAGCTCGGGGAGGCCGCGCGGCAGATGCCGTGCAAGCACGTGTACCACTCCG
ACTGCATCGTGCCGTGGCTCCGCCTCCACAACTCCTGCCCCGTCTGCCGGTACCAGCTGCTGTCCTCCGCCGCCGCCGGG
TCCAACGCCAACAGCCGAGCTCGCCGCGGCAGCGCCAACAACGGTGGCGGCGGCGGCGGCGGCGATGGCCGGGACAGGGA
GCAGACGATCGTGAGGTGGGGGCCCTTCTCGTGGATGTGGCCGCCGCGGGGGCTCGAAGACCCCGACGACGGGTGGGAGT
ACGGACGGCGAGGAAGGCCAGAGGCGGGCGACGCCGGCGGTAGAATGTGTAACGACCATGGAAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12618.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis