Browse Element(s) Details


Os.53448.1.S1_at

Description gb:AK072697.1
DB_XREF= gi:32982720
TID=Os.53448.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53448 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023136E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023136E04, full insert sequence.
FL= gb:AK072697.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5284010/11Flavonol synthase/flavanone 3-hydroxylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52810Os.27898.1.A1_at11/112+32280722..32286221Remorin, C-terminal region family protein, expressed
LOC_Os02g52820Os.51673.1.S1_at11/112+32289451..32292822expressed protein
LOC_Os02g52830Os.51956.1.S1_at11/112+32294664..32298113Lipase family protein, expressed
LOC_Os02g52840Os.53448.1.S1_at10/112+32304930..32306315Flavonol synthase/flavanone 3-hydroxylase, putative, expressed
LOC_Os02g52850Os.53369.1.S1_at11/112+32307084..32310123D-mannose binding lectin family protein, expressed
LOC_Os02g52860Os.8496.1.S1_at11/112+32313510..32317463Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os02g52870OsAffx.12618.1.S1_at10/112+32318605..32320085Zinc finger, C3HC4 type family protein
LOC_Os02g52880Os.10895.1.S1_at11/112+32320298..32324247expressed protein
LOC_Os02g52890OsAffx.3050.1.S1_at11/112+32329755..32330054hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007033biological_processvacuole organization and biogenesis
GO:0009813biological_processflavonoid biosynthesis
GO:0010023biological_processproanthocyanidin biosynthesis
GO:0045431molecular_functionflavonol synthase activity
GO:0045432molecular_functionleucoanthocyanidin dioxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53448.1.S1_at--1160--5771Chr02:32305561..32305585 (25 bp)
GACGAGCTGGTGTTCCTGCATAAGA
LOC_Os02g52840
Os.53448.1.S1_at--71--9071Chr02:32305545..32305569 (25 bp)
TGCATAAGATCAACTTCTACCCGCC
LOC_Os02g52840
Os.53448.1.S1_at--457--4331Chr02:32305439..32305463 (25 bp)
CCAGGGCCTCCAGGTATTCAAGGAT
LOC_Os02g52840
Os.53448.1.S1_at--568--8451Chr02:32305415..32305439 (25 bp)
TGGCCACTGGTACGACGTCAAGTAC
LOC_Os02g52840
Os.53448.1.S1_at--400--491Chr02:32305274..32305390 (25 bp)
ATCGGCGACCAGATCGAGATTCTGA
LOC_Os02g52840
Os.53448.1.S1_at--765--6751Chr02:32305089..32305113 (25 bp)
GTTCAAAGATTACCGGCACTGCAAG
LOC_Os02g52840
Os.53448.1.S1_at--473--1271Chr02:32305066..32305090 (25 bp)
AGATCAATAAGCTCCCCATGTAAAT
LOC_Os02g52840
Os.53448.1.S1_at--711--5631Chr02:32305009..32305033 (25 bp)
GACACCCAAGTACCAAGAGTGCTAT
LOC_Os02g52840
Os.53448.1.S1_at--123--7531Chr02:32304976..32305000 (25 bp)
GTGGACGCTGCTCAATGTGATGCTA
LOC_Os02g52840
Os.53448.1.S1_at--920--6671Chr02:32304946..32304970 (25 bp)
GTTGCTCTGATTGCTAATCTGCTGC
LOC_Os02g52840
Os.53448.1.S1_at--364--471Chr02:32304930..32304954 (25 bp)
ATCTGCTGCTTTCTGATTCGTAATC
NONE
Target Sequence 
GACGAGCTGGTGTTCCTGCATAAGATCAACTTCTACCCGCCGTGCCCGGAGCCGGAGCTAACCCTCGGCGTCGCGCCGCA
CACCGACATGAGCACGTTCACCGTCCTCGTCCCCAACGACGTCCAGGGCCTCCAGGTATTCAAGGATGGCCACTGGTACG
ACGTCAAGTACGTCCCCGACGCCCTCATCATCCACATCGGCGACCAGATCGAGATTCTGAGCAACGGGAGGTACAAGGCG
GTGCTGCATCGGACGACGGTGGACAAGGACAGGACGCGGATGTCGTGGCCGGTGTTCGTCGAGCCGCCGCCGGAGCACGT
CGTCGGGCCGCACCCGCAGCTCGTCACCGACGGGAGCCCGGCCAAGTACAAGGCCAAGAAGTTCAAAGATTACCGGCACT
GCAAGATCAATAAGCTCCCCATGTAAATTTGTAATTGGGCCATGGAAACATCGCCCCCATGACACCCAAGTACCAAGAGT
GCTATTGCTGGATGTGGACGCTGCTCAATGTGATGCTAGTTAAGTTGCTCTGATTGCTAATCTGCTGCTTTCTGATTCGT
AATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53448.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis