Browse Element(s) Details


Os.53710.1.S1_at

Description gb:AK099419.1
DB_XREF= gi:32984628
TID=Os.53710.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53710 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013006N13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013006N13, full insert sequence.
FL= gb:AK099419.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2550011/11expressed protein
LOC_Os02g527201/11SCP-2 sterol transfer family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25450OsAffx.27508.85.S1_s_at10/111+14397151..14413734AIG1 family protein, expressed
LOC_Os01g25450Os.16833.1.S1_x_at4/111+14397151..14413734AIG1 family protein, expressed
LOC_Os01g25460Os.35957.1.S1_at11/111+14420371..14422169leucine-rich repeat family protein, putative, expressed
LOC_Os01g25470OsAffx.2085.1.S1_at11/111+14425198..14427377flavin-containing monooxygenase family protein, putative
LOC_Os01g25470Os.37971.1.A1_at1/111+14425198..14427377flavin-containing monooxygenase family protein, putative
LOC_Os01g25484Os.142.2.A1_a_at11/111+14429394..14435943Nitrite/Sulfite reductase ferredoxin-like half domain containing protein, expressed
LOC_Os01g25484Os.12293.4.S1_x_at6/111+14429394..14435943Nitrite/Sulfite reductase ferredoxin-like half domain containing protein, expressed
LOC_Os01g25500Os.53710.1.S1_at11/111+14436171..14437040expressed protein
LOC_Os01g25510Os.12293.3.S2_at11/111+14442488..14443855Alpha-amylase precursor, putative
LOC_Os01g25510Os.12293.3.S2_x_at11/111+14442488..14443855Alpha-amylase precursor, putative
LOC_Os01g25510Os.57437.1.S1_x_at2/111+14442488..14443855Alpha-amylase precursor, putative
LOC_Os01g25520Os.12293.4.S1_x_at10/111+14444842..14447357hypothetical protein
LOC_Os01g25520Os.12293.4.S1_at8/111+14444842..14447357hypothetical protein
LOC_Os01g25520Os.44022.1.S1_x_at1/111+14444842..14447357hypothetical protein
LOC_Os01g25530NANA1+14454283..14457818PPR986-12, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005498molecular_functionsterol carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53710.1.S1_at--93--9431Chr01:14436208..14436232 (25 bp)
TCTGAACCAAAAATCGTGCGACGCG
LOC_Os01g25500
Os.53710.1.S1_at--1019--5792Chr01:14436227..14436251 (25 bp)
GACGCGATGGAAGGGAGCAACCTCA
LOC_Os01g25500
Os.53710.1.S1_at--492--1752Chr01:14436246..14436270 (25 bp)
ACCTCAAGTCGGCTGCGCTACTGGA
LOC_Os01g25500
Os.53710.1.S1_at--622--4571Chr01:14436260..14436284 (25 bp)
GCGCTACTGGAGCAGTTGCATGTCC
LOC_Os01g25500
Os.53710.1.S1_at--612--8071Chr01:14436307..14436331 (25 bp)
GGAGCTCGTCGAAATGATCGGCTTC
LOC_Os01g25500
Os.53710.1.S1_at--324--2511Chr01:14436344..14436477 (25 bp)
AACATCTCTCCCAAGAAACTCGGTT
LOC_Os01g25500
Os.53710.1.S1_at--332--6171Chr01:14436483..14436507 (25 bp)
GAGGAGGTATTCATCGTCGTCGATC
LOC_Os01g25500
Os.53710.1.S1_at--177--3252Chr01:14436856..14436880 (25 bp)
CAAGCCATCCAAACTGTAGGGTTGA
LOC_Os01g25500
Os.53710.1.S1_at--1033--9631Chr01:14436943..14436967 (25 bp)
TCAGAGATGTTCTTGTGGTACCATA
LOC_Os01g25500
Os.53710.1.S1_at--983--271Chr01:14436965..14436989 (25 bp)
ATAGAGATGCTGTTGGCGTTCCCCT
LOC_Os01g25500
Os.53710.1.S1_at--311--9311Chr01:14436984..14437008 (25 bp)
TCCCCTCGAGCTTGTTTTCATAAGA
LOC_Os01g25500
Target Sequence 
TCTGAACCAAAAATCGTGCGACGCGATGGAAGGGAGCAACCTCAAGTCGGCTGCGCTACTGGAGCAGTTGCATGTCCACC
TCGCGTCCGGCGCCGGCAAGGAGCTCGTCGAAATGATCGGCTTCGTCTACCAGCTCAACATCTCTCCCAAGAAACTCGGT
TTCGACGAGGAGGTATTCATCGTCGTCGATCTCAAGAAGGGCGTCGTCTCCAAAGGGCCGTACGAGGGGAAGCCAGACGC
GACCTTCTCCTTCACGGACGACGATTTCCTGGCCATCTCCAGCGGGGCAAATTGAAGATCAAGGGGAGTATAAGCGCGGC
GCAGAAGTTCACGCCGGACATCGATCTTCCCCAAGCCATCCAAACTGTAGGGTTGAGTGGAGTTCGACAATTAATACAAA
CAGGCAGTTGGAGTAGTAATTTTAGTCTGAAAAATAGTTCAGAGATGTTCTTGTGGTACCATAGAGATGCTGTTGGCGTT
CCCCTCGAGCTTGTTTTCATAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53710.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis