Browse Element(s) Details


Os.44022.1.S1_x_at

Description gb:NM_187316.1
DB_XREF= gi:34901717
GEN=P0434A03.24
TID=Os.44022.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44022 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0434A03.24 (P0434A03.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0434A03.24 (P0434A03.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g255201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25460Os.35957.1.S1_at11/111+14420371..14422169leucine-rich repeat family protein, putative, expressed
LOC_Os01g25470OsAffx.2085.1.S1_at11/111+14425198..14427377flavin-containing monooxygenase family protein, putative
LOC_Os01g25470Os.37971.1.A1_at1/111+14425198..14427377flavin-containing monooxygenase family protein, putative
LOC_Os01g25484Os.142.2.A1_a_at11/111+14429394..14435943Nitrite/Sulfite reductase ferredoxin-like half domain containing protein, expressed
LOC_Os01g25484Os.12293.4.S1_x_at6/111+14429394..14435943Nitrite/Sulfite reductase ferredoxin-like half domain containing protein, expressed
LOC_Os01g25500Os.53710.1.S1_at11/111+14436171..14437040expressed protein
LOC_Os01g25510Os.12293.3.S2_at11/111+14442488..14443855Alpha-amylase precursor, putative
LOC_Os01g25510Os.12293.3.S2_x_at11/111+14442488..14443855Alpha-amylase precursor, putative
LOC_Os01g25510Os.57437.1.S1_x_at2/111+14442488..14443855Alpha-amylase precursor, putative
LOC_Os01g25520Os.12293.4.S1_x_at10/111+14444842..14447357hypothetical protein
LOC_Os01g25520Os.12293.4.S1_at8/111+14444842..14447357hypothetical protein
LOC_Os01g25520Os.44022.1.S1_x_at1/111+14444842..14447357hypothetical protein
LOC_Os01g25530NANA1+14454283..14457818PPR986-12, putative, expressed
LOC_Os01g25540Os.22341.1.S1_at11/111+14463287..14464034Rapid ALkalinization Factor family protein, expressed
LOC_Os01g25550NANA1+14466808..14467011hypothetical protein
LOC_Os01g25560Os.10667.1.S1_at11/111+14468875..14469639rapid alkalinization factor, putative, expressed
LOC_Os01g25569NANA1+14470751..14472417NA

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005739cellular_componentmitochondrion
GO:0047889molecular_functionferredoxin-nitrate reductase activity
GO:0050421molecular_functionnitrite reductase (NO-forming) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44022.1.S1_x_at--683--953Chr01:14445458..14445478 (21 bp)
AGGAAATGAGCTTCGCTCCTCAGCC
LOC_Os01g25520
Os.44022.1.S1_x_at--310--10591Chr07:17453833..17453857 (25 bp)
TTCTCTCACATTTGCTCGACACACG
NONE
Os.44022.1.S1_x_at--1162--3571Chr07:17453825..17453849 (25 bp)
CATTTGCTCGACACACGATTCAGGA
NONE
Os.44022.1.S1_x_at--722--9351Chr07:17453818..17453842 (25 bp)
TCGACACACGATTCAGGAAGGAGGA
NONE
Os.44022.1.S1_x_at--156--5571Chr07:17453789..17453813 (25 bp)
GAAAGAGTCGATGCTCGAGGTCAAG
NONE
Os.44022.1.S1_x_at--423--4711Chr07:17453762..17453786 (25 bp)
GCGGCGCCTCCATTGTCTTCTTCTT
NONE
Os.44022.1.S1_x_at--543--591Chr07:17453718..17453742 (25 bp)
ATGCCATCTTCCTCACCGGTTGCTT
NONE
Os.44022.1.S1_x_at--324--3971Chr07:17453702..17453726 (25 bp)
CGGTTGCTTCCTCCCTTCATGTGCT
NONE
Os.44022.1.S1_x_at--507--10531Chr07:17453687..17453711 (25 bp)
TTCATGTGCTCCCACGTGCCAAATC
NONE
Os.44022.1.S1_x_at--301--3351Chr07:17453675..17453699 (25 bp)
CACGTGCCAAATCCAGAGGCCGACG
NONE
Os.44022.1.S1_x_at--625--7971Chr07:17453569..17453593 (25 bp)
GGATCCGGTGGCTATGAGCTCACGG
NONE
Target Sequence 
AGGAAATGAGCTTCGCTCCTCAGCCAGGCCCGGCNCGTGCAGGCGCGGGCACGAGNNNNTGCAAGTGTGGGACGGGCTGG
TGCAGTGATGGGCAAGGGGTTGGCGNNNNGATCCCCTCACCGCCTTCTCTCACATTTGCTCGACACACGATTCAGGAAGG
AGGAAGAGGAAAGAGTCGATGCTCGAGGTCAAGGGGCGGCGCCTCCATTGTCTTCTTCTTCCCCTCCTCACCATCGCCGA
TGCCATCTTCCTCACCGGTTGCTTCCTCCCTTCATGTGCTCCCACGTGCCAAATCCAGAGGCCGACGGTCGCCCCATCAC
CACCATCTTCCTCGCGATCCCCTTCGCTGCCACCGCCGTCCCCTCCTTTCTCCAGCCGCCGGACCACCGGATCCGGTGGC
TATGAGCTCACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44022.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis