Browse Element(s) Details


Os.12293.3.S2_x_at

Description gb:AK105269.1
DB_XREF= gi:32990478
TID=Os.12293.3
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12293 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative alpha-amylase (P0025H06.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-E08, full insert sequence.
FL= gb:AK105269.1 gb:AK066749.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2551011/11Alpha-amylase precursor, putative
LOC_Os02g527105/11Alpha-amylase precursor, putative, expressed
LOC_Os02g527003/11Alpha-amylase precursor, putative, expressed
LOC_Os12g139301/113-oxoacyl-reductase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25460Os.35957.1.S1_at11/111+14420371..14422169leucine-rich repeat family protein, putative, expressed
LOC_Os01g25470OsAffx.2085.1.S1_at11/111+14425198..14427377flavin-containing monooxygenase family protein, putative
LOC_Os01g25470Os.37971.1.A1_at1/111+14425198..14427377flavin-containing monooxygenase family protein, putative
LOC_Os01g25484Os.142.2.A1_a_at11/111+14429394..14435943Nitrite/Sulfite reductase ferredoxin-like half domain containing protein, expressed
LOC_Os01g25484Os.12293.4.S1_x_at6/111+14429394..14435943Nitrite/Sulfite reductase ferredoxin-like half domain containing protein, expressed
LOC_Os01g25500Os.53710.1.S1_at11/111+14436171..14437040expressed protein
LOC_Os01g25510Os.12293.3.S2_at11/111+14442488..14443855Alpha-amylase precursor, putative
LOC_Os01g25510Os.12293.3.S2_x_at11/111+14442488..14443855Alpha-amylase precursor, putative
LOC_Os01g25510Os.57437.1.S1_x_at2/111+14442488..14443855Alpha-amylase precursor, putative
LOC_Os01g25520Os.12293.4.S1_x_at10/111+14444842..14447357hypothetical protein
LOC_Os01g25520Os.12293.4.S1_at8/111+14444842..14447357hypothetical protein
LOC_Os01g25520Os.44022.1.S1_x_at1/111+14444842..14447357hypothetical protein
LOC_Os01g25530NANA1+14454283..14457818PPR986-12, putative, expressed
LOC_Os01g25540Os.22341.1.S1_at11/111+14463287..14464034Rapid ALkalinization Factor family protein, expressed
LOC_Os01g25550NANA1+14466808..14467011hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005983biological_processstarch catabolism
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0005576cellular_componentextracellular region
GO:0009507cellular_componentchloroplast
GO:0004316molecular_function3-oxoacyl-[acyl-carrier protein] reductase activity
GO:0004556molecular_functionalpha-amylase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12293.3.S2_x_at--272--8333Chr02:32238091..32238115 (25 bp)
GGCTCGACTGGCTCAAGATGGACAT
LOC_Os02g52700
Os.12293.3.S2_x_at--176--853Chr02:32238108..32238132 (25 bp)
ATGGACATCGGCTTCGACGCGTGGC
LOC_Os02g52700
Os.12293.3.S2_x_at--756--5131Chr01:14443255..14443279 (25 bp)
GCAAAGATCTACATCGATGCCACCG
LOC_Os01g25510
Os.12293.3.S2_x_at--1074--10633Chr02:32238201..32238225 (25 bp)
TTCGCCGTGGCCGAGATATGGACGT
LOC_Os02g52700
Os.12293.3.S2_x_at--216--7091Chr01:14443375..14443399 (25 bp)
GTCAACTGGGTCAATCGTGTCGGCG
LOC_Os01g25510
Os.12293.3.S2_x_at--46--10311Chr01:14443592..14443616 (25 bp)
TTTCCCTCCGACAAGGATATGCCTA
LOC_Os01g25510
Os.12293.3.S2_x_at--157--1652Chr01:14443637..14443661 (25 bp)
ACCCATGCATCGTGAGTAGCCAACT
LOC_Os01g25510
Os.12293.3.S2_x_at--594--6971Chr01:14443652..14443676 (25 bp)
GTAGCCAACTCGATTAGAAATTCTG
LOC_Os01g25510
Os.12293.3.S2_x_at--4--5613Chr12:7915711..7915825 (25 bp)
GAAATTCTGAATCATCCTGCTGCAA
LOC_Os12g13930
Os.12293.3.S2_x_at--620--411Chr01:14443678..14443702 (25 bp)
ATCATCCTGCTGCAAACTGATCGAT
LOC_Os01g25510
Os.12293.3.S2_x_at--15--5131Chr01:14443721..14443745 (25 bp)
GCAAAACTCTTTCAGTTCTACGACC
LOC_Os01g25510
Target Sequence 
GGCTCGACTGGCTCAAGATGGACATCGGCTTCGACGCGTGGCGCCTCGACTTCGCCAAGGGCTACTCCGCCGACATGGCA
AAGATCTACATCGATGCCACCGAGCCGAGCTTCGCCGTGGCCGAGATATGGACGTCGATGGCGAACGGCGGGGACGGCAA
GCCGAACTACGACCAGAACGCGCACCGGCAGGAGCTGGTCAACTGGGTCAATCGTGTCGGCGGCGCCAACAGCAATGCCA
CGGCGTTCGACTTCACCACCAAGGGCATCCTCAACGTCGCCGTGGAGAGCGATCGAGCTGTGGCGCCTCCGCGGCGAGGA
CGGCAAGGCGCCCGGCATGATCGGGTGGTGGCCGGCCAAGGCGACGACCTTCGTCGACAACCACGACACCGGCTCGACGC
AGCACCTGTGGCCGTTTCCCTCCGACAAGGATATGCCTACATCCTCACCCACCCCGGCAACCCATGCATCGTGAGTAGCC
AACTCGATTAGAAATTCTGAATCATCCTGCTGCAAACTGATCGATGAACTGAAGATAAATTCTGCAAAACTCTTTCAGTT
CTACGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12293.3.S2_x_at     

Putative homologies in rice

Putative homologies in arabidopsis