Browse Element(s) Details


OsAffx.3048.1.S1_at

Description tigr:9630.m05205
TID=OsAffx.3048.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5276011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52700Os.57437.1.S1_at11/112+32237297..32239099Alpha-amylase precursor, putative, expressed
LOC_Os02g52700Os.57437.1.S1_x_at11/112+32237297..32239099Alpha-amylase precursor, putative, expressed
LOC_Os02g52700Os.57438.1.S1_at11/112+32237297..32239099Alpha-amylase precursor, putative, expressed
LOC_Os02g52700Os.12293.3.S2_x_at3/112+32237297..32239099Alpha-amylase precursor, putative, expressed
LOC_Os02g52710Os.49249.1.S1_at11/112+32242460..32244308Alpha-amylase precursor, putative, expressed
LOC_Os02g52710Os.12293.3.S2_x_at5/112+32242460..32244308Alpha-amylase precursor, putative, expressed
LOC_Os02g52710Os.12293.3.S2_at3/112+32242460..32244308Alpha-amylase precursor, putative, expressed
LOC_Os02g52710Os.57437.1.S1_x_at3/112+32242460..32244308Alpha-amylase precursor, putative, expressed
LOC_Os02g52720Os.53710.1.S1_at1/112+32247269..32247932SCP-2 sterol transfer family protein
LOC_Os02g52730Os.12293.4.S1_x_at3/112+32248395..32251488Ferredoxin-nitrite reductase, chloroplast precursor, putative
LOC_Os02g52730Os.142.2.A1_a_at2/112+32248395..32251488Ferredoxin-nitrite reductase, chloroplast precursor, putative
LOC_Os02g52744Os.5136.1.S1_a_at11/112+32255725..32261665DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52744Os.5136.1.S1_at10/112+32255725..32261665DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52744Os.5136.2.S1_x_at10/112+32255725..32261665DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52744OsAffx.12616.1.S1_at3/112+32255725..32261665DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52744Os.50229.1.S1_at1/112+32255725..32261665DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52760OsAffx.3048.1.S1_at11/112+32263034..32263530hypothetical protein
LOC_Os02g52770Os.9397.1.S1_at11/112+32268002..32269372expressed protein
LOC_Os02g52780Os.11781.1.S1_at11/112+32270776..32275781bZIP transcription factor family protein, expressed
LOC_Os02g52790OsAffx.12617.1.S1_at11/112+32276805..32277407PB1 domain containing protein
LOC_Os02g52800OsAffx.24838.1.S1_at11/112+32278116..32279746beta-mannan endohydrolase, putative, expressed
LOC_Os02g52810Os.27898.1.A1_at11/112+32280722..32286221Remorin, C-terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3048.1.S1_at--1092--9811Chr02:32263245..32263269 (25 bp)
TAACACGGGAGCTTGAGGAGTCTAC
LOC_Os02g52760
OsAffx.3048.1.S1_at--1126--5911Chr02:32263237..32263261 (25 bp)
GAGCTTGAGGAGTCTACTGGCAGCA
LOC_Os02g52760
OsAffx.3048.1.S1_at--436--9931Chr02:32263223..32263247 (25 bp)
TACTGGCAGCACAACGAGGAGAGCT
LOC_Os02g52760
OsAffx.3048.1.S1_at--208--5991Chr02:32263205..32263229 (25 bp)
GAGAGCTCTACGCAACCTCCAGATG
LOC_Os02g52760
OsAffx.3048.1.S1_at--518--1851Chr02:32263196..32263220 (25 bp)
ACGCAACCTCCAGATGTATGACAAG
LOC_Os02g52760
OsAffx.3048.1.S1_at--54--2231Chr02:32263176..32263200 (25 bp)
ACAAGGTGGAGGTCACAAGCATGGT
LOC_Os02g52760
OsAffx.3048.1.S1_at--439--2211Chr02:32263162..32263186 (25 bp)
ACAAGCATGGTAGGTGATGATCCAG
LOC_Os02g52760
OsAffx.3048.1.S1_at--953--6271Chr02:32263147..32263171 (25 bp)
GATGATCCAGTTAGGAGTAATGCGA
LOC_Os02g52760
OsAffx.3048.1.S1_at--696--2951Chr02:32263129..32263153 (25 bp)
AATGCGAGGGAAAGCGAGGCCAACC
LOC_Os02g52760
OsAffx.3048.1.S1_at--941--6211Chr02:32263114..32263138 (25 bp)
GAGGCCAACCTAGCGATGGACACAT
LOC_Os02g52760
OsAffx.3048.1.S1_at--660--1631Chr02:32263103..32263127 (25 bp)
AGCGATGGACACATTGACATGGAGT
LOC_Os02g52760
Target Sequence 
TAACACGGGAGCTTGAGGAGTCTACTGGCAGCACAACGAGGAGAGCTCTACGCAACCTCCAGATGTATGACAAGGTGGAG
GTCACAAGCATGGTAGGTGATGATCCAGTTAGGAGTAATGCGAGGGAAAGCGAGGCCAACCTAGCGATGGACACATTGAC
ATGGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3048.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis