Browse Element(s) Details


Os.49249.1.S1_at

Description gb:M24286.1
DB_XREF= gi:169752
TID=Os.49249.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.49249 (NCBI UniGene Cluster)
UG_TITLE=Rice alpha-amylase mRNA, complete cds, clone pOS103
DEF=Rice alpha-amylase mRNA, complete cds, clone pOS103.
FL= gb:AK101744.1 gb:M24286.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5271011/11Alpha-amylase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52690OsAffx.22848.3.S1_x_at10/112+32221789..32228954retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g52690OsAffx.22848.4.S1_at2/112+32221789..32228954retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g52690OsAffx.22848.4.S1_x_at1/112+32221789..32228954retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g52700Os.57437.1.S1_at11/112+32237297..32239099Alpha-amylase precursor, putative, expressed
LOC_Os02g52700Os.57437.1.S1_x_at11/112+32237297..32239099Alpha-amylase precursor, putative, expressed
LOC_Os02g52700Os.57438.1.S1_at11/112+32237297..32239099Alpha-amylase precursor, putative, expressed
LOC_Os02g52700Os.12293.3.S2_x_at3/112+32237297..32239099Alpha-amylase precursor, putative, expressed
LOC_Os02g52710Os.49249.1.S1_at11/112+32242460..32244308Alpha-amylase precursor, putative, expressed
LOC_Os02g52710Os.12293.3.S2_x_at5/112+32242460..32244308Alpha-amylase precursor, putative, expressed
LOC_Os02g52710Os.12293.3.S2_at3/112+32242460..32244308Alpha-amylase precursor, putative, expressed
LOC_Os02g52710Os.57437.1.S1_x_at3/112+32242460..32244308Alpha-amylase precursor, putative, expressed
LOC_Os02g52720Os.53710.1.S1_at1/112+32247269..32247932SCP-2 sterol transfer family protein
LOC_Os02g52730Os.12293.4.S1_x_at3/112+32248395..32251488Ferredoxin-nitrite reductase, chloroplast precursor, putative
LOC_Os02g52730Os.142.2.A1_a_at2/112+32248395..32251488Ferredoxin-nitrite reductase, chloroplast precursor, putative
LOC_Os02g52744Os.5136.1.S1_a_at11/112+32255725..32261665DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52744Os.5136.1.S1_at10/112+32255725..32261665DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52744Os.5136.2.S1_x_at10/112+32255725..32261665DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52744OsAffx.12616.1.S1_at3/112+32255725..32261665DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52744Os.50229.1.S1_at1/112+32255725..32261665DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52760OsAffx.3048.1.S1_at11/112+32263034..32263530hypothetical protein
LOC_Os02g52770Os.9397.1.S1_at11/112+32268002..32269372expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005983biological_processstarch catabolism
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0005576cellular_componentextracellular region
GO:0009507cellular_componentchloroplast
GO:0004556molecular_functionalpha-amylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49249.1.S1_at--1151--9531Chr02:32242791..32242815 (25 bp)
TCTACCTCGCGGAGATCGATGGCAA
LOC_Os02g52710
Os.49249.1.S1_at--490--2271Chr02:32242668..32242692 (25 bp)
AAATCTGAGCGCACGATGACGAGAC
LOC_Os02g52710
Os.49249.1.S1_at--818--5771Chr02:32242651..32242675 (25 bp)
GACGAGACTCTCAGTTTAGCAGATT
LOC_Os02g52710
Os.49249.1.S1_at--1082--6511Chr02:32242630..32242654 (25 bp)
GATTTAACCTGCGATTTTTACCCTG
LOC_Os02g52710
Os.49249.1.S1_at--288--10451Chr02:32242613..32242637 (25 bp)
TTACCCTGACCGGTATACGTATATA
LOC_Os02g52710
Os.49249.1.S1_at--994--9911Chr02:32242598..32242622 (25 bp)
TACGTATATACGTGCCGGCAACGAG
LOC_Os02g52710
Os.49249.1.S1_at--744--8231Chr02:32242582..32242606 (25 bp)
GGCAACGAGCTGTATCCGATCCGAA
LOC_Os02g52710
Os.49249.1.S1_at--945--5211Chr02:32242560..32242584 (25 bp)
GAATTACGGATGCAATTGTCCACGA
LOC_Os02g52710
Os.49249.1.S1_at--1111--5191Chr02:32242549..32242573 (25 bp)
GCAATTGTCCACGAAGTACTTCCTC
LOC_Os02g52710
Os.49249.1.S1_at--634--7391Chr02:32242514..32242538 (25 bp)
GTGAGGATCAGGGACATACATTTGT
LOC_Os02g52710
Os.49249.1.S1_at--1091--7871Chr02:32242487..32242511 (25 bp)
GGTTTTACGAATAATGCTATGCAAT
LOC_Os02g52710
Target Sequence 
TCTACCTCGCGGAGATCGATGGCAAGGTGATCACAAAGATTGGACCAAGATACGACGTCGAACACCTCATCCCCGAAGGC
TTCCAGGTCGTCGCGCACGGTGATGGCTACGCAATCTGGGAGAAAATCTGAGCGCACGATGACGAGACTCTCAGTTTAGC
AGATTTAACCTGCGATTTTTACCCTGACCGGTATACGTATATACGTGCCGGCAACGAGCTGTATCCGATCCGAATTACGG
ATGCAATTGTCCACGAAGTACTTCCTCCGTAAATAAAGTGAGGATCAGGGACATACATTTGTATGGTTTTACGAATAATG
CTATGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49249.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis