Browse Element(s) Details


OsAffx.28689.1.S1_at

Description tigr:9635.m03053
TID=OsAffx.28689.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3119011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31140Os.8147.1.S1_a_at2/117+18426212..184295853-oxo-5-alpha-steroid 4-dehydrogenase family protein, putative
LOC_Os07g31150OsAffx.16503.1.S1_at11/117+18434258..18435116hypothetical protein
LOC_Os07g31160NANA7+18437461..18441582hypothetical protein
LOC_Os07g31170OsAffx.20387.1.S1_x_at2/117+18442196..18448292retrotransposon protein, putative, unclassified
LOC_Os07g31190OsAffx.28689.1.S1_at11/117+18451961..18460762expressed protein
LOC_Os07g31200OsAffx.28690.1.S1_at9/117+18473342..18474200hypothetical protein
LOC_Os07g31210Os.44009.1.S1_at11/117+18477349..18479358Protein kinase domain containing protein
LOC_Os07g31220NANA7+18480206..18480860hypothetical protein
LOC_Os07g31230OsAffx.28692.1.S1_at10/117+18485023..18487346hypothetical protein
LOC_Os07g31230OsAffx.23391.1.S1_at2/117+18485023..18487346hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28689.1.S1_at--802--9671Chr07:18460201..18460225 (25 bp)
TCACCTGCACTCACTTAATGTGGTT
LOC_Os07g31190
OsAffx.28689.1.S1_at--658--9771Chr07:18460216..18460240 (25 bp)
TAATGTGGTTCACGGCGATGTCAGA
LOC_Os07g31190
OsAffx.28689.1.S1_at--550--2191Chr07:18460333..18460357 (25 bp)
ACAAAGGCTCCTTTCCTTGGATAAG
LOC_Os07g31190
OsAffx.28689.1.S1_at--17--10651Chr07:18460409..18460433 (25 bp)
TTCCTCAAGACTGGGCTCATGGCTA
LOC_Os07g31190
OsAffx.28689.1.S1_at--2--8771Chr07:18460444..18460468 (25 bp)
TGTATATGGTTTTGGCGTGGTTCTT
LOC_Os07g31190
OsAffx.28689.1.S1_at--216--8551Chr07:18460470..18460494 (25 bp)
TGGAGCTCTTCGCACAGAACATGGT
LOC_Os07g31190
OsAffx.28689.1.S1_at--48--4951Chr07:18460536..18460560 (25 bp)
GCATTCCTGCTAGATGCCATCATCT
LOC_Os07g31190
OsAffx.28689.1.S1_at--130--8631Chr07:18460586..18460610 (25 bp)
TGGTGTCTTGCATCCAAGGTGACGG
LOC_Os07g31190
OsAffx.28689.1.S1_at--910--6351Chr07:18460638..18460662 (25 bp)
GATGCCTTCGAGCTGTCTTGACAAA
LOC_Os07g31190
OsAffx.28689.1.S1_at--153--2451Chr07:18460668..18460692 (25 bp)
AAAATCTTCATGATCCCTGCAACTG
LOC_Os07g31190
OsAffx.28689.1.S1_at--708--9771Chr07:18460708..18460732 (25 bp)
TAAGTCTGCGATGCAGTCCGAGCAA
LOC_Os07g31190
Target Sequence 
TCACCTGCACTCACTTAATGTGGTTCACGGCGATGTCAGAACTGCCAATGTAGTACTGGATGTTTATTCTAAATCTAAGC
TCGAAATGCCTGGGATAACTGCATTTATGGCAAAGATTGCAGGTTATGGAACACAAAGGCTCCTTTCCTTGGATAAGGCC
AAGCATGAAATATTTCTAACAGAGAACATCCATTACAAGGATCCACACTTCCTCAAGACTGGGCTCATGGCTAAGGAATA
TGATGTATATGGTTTTGGCGTGGTTCTTGTGGAGCTCTTCGCACAGAACATGGTGCAAATGCATGACGTAAACATGGTGC
TCAAAGAACTTGATGGCATTCCTGCTAGATGCCATCATCTTAAGGAAATTAAGAAACTTGCTTCTTGGTGTCTTGCATCC
AAGGTGACGGAGAGGCCAGCAATGGACAAGGTAGTACGATGCCTTCGAGCTGTCTTGACAAACCTGCAAAATCTTCATGA
TCCCTGCAACTGCAAGTCAATGTATAATAAGTCTGCGATGCAGTCCGAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28689.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis