Browse Element(s) Details


Os.8147.1.S1_a_at

Description gb:AK073542.1
DB_XREF= gi:32983565
TID=Os.8147.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8147 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-021-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033042F22, full insert sequence.
FL= gb:AK104042.1 gb:AK073542.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4875010/113-oxo-5-alpha-steroid 4-dehydrogenase family protein, putative, expressed
LOC_Os07g311402/113-oxo-5-alpha-steroid 4-dehydrogenase family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g48710Os.8148.1.S1_a_at11/114+28823861..28827816expressed protein
LOC_Os04g48720OsAffx.26528.1.S1_at7/114+28836918..28838221hypothetical protein
LOC_Os04g48730Os.11503.1.S1_at11/114+28846801..28850115expressed protein
LOC_Os04g48740OsAffx.26529.1.S1_at11/114+28850518..28851057hypothetical protein
LOC_Os04g48750Os.8147.1.S1_a_at10/114+28852734..288571723-oxo-5-alpha-steroid 4-dehydrogenase family protein, putative, expressed
LOC_Os04g48760OsAffx.14332.1.S1_x_at11/114+28863453..28867523Leucine Rich Repeat family protein, expressed
LOC_Os04g48760Os.18364.1.S1_at11/114+28863453..28867523Leucine Rich Repeat family protein, expressed
LOC_Os04g48770Os.6655.2.S1_at11/114+28869728..28873880Ubiquitin fusion degradation protein UFD1 containing protein, expressed
LOC_Os04g48770Os.6655.1.S1_at11/114+28869728..28873880Ubiquitin fusion degradation protein UFD1 containing protein, expressed
LOC_Os04g48780Os.43764.1.A1_at6/114+28880118..28882370Transposase, putative
LOC_Os04g48780OsAffx.24046.2.S1_x_at3/114+28880118..28882370Transposase, putative
LOC_Os04g48780OsAffx.24046.7.S1_x_at3/114+28880118..28882370Transposase, putative
LOC_Os04g48780OsAffx.24046.3.S1_x_at1/114+28880118..28882370Transposase, putative

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0016132biological_processbrassinosteroid biosynthesis
GO:0003865molecular_function3-oxo-5-alpha-steroid 4-dehydrogenase activity
GO:0009917molecular_functionsterol 5-alpha reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8147.1.S1_a_at--1074--8092Chr07:18428008..18428032 (25 bp)
GGACCCAGTGGATAGGTGCTGTTAT
LOC_Os07g31140
Os.8147.1.S1_a_at--996--6371NONE
GATCCGTTGCCATGCAATTCTTGGA
NONE
Os.8147.1.S1_a_at--257--3151Chr04:28855424..28855878 (25 bp)
AATTCTTGGAACGTTGCGTGAGCAC
LOC_Os04g48750
Os.8147.1.S1_a_at--835--7071Chr04:28855897..28855921 (25 bp)
GTAATTCCTTGTGGTGACTGGTTTA
LOC_Os04g48750
Os.8147.1.S1_a_at--624--10491Chr04:28855919..28855943 (25 bp)
TTAATCGAGTCTCTTGCCCTCATTA
LOC_Os04g48750
Os.8147.1.S1_a_at--886--4172Chr07:18428589..18428611 (23 bp)
CCCTCATTACCTTGCTGAACTAGTA
LOC_Os07g31140
Os.8147.1.S1_a_at--135--7911Chr04:28856668..28856824 (25 bp)
GGTTCCTGTTCGTATTTGTGATCAC
LOC_Os04g48750
Os.8147.1.S1_a_at--1144--4852Chr07:18429581..18429605 (25 bp)
GCTAGTGTCTACGAAATGGCTACAT
NONE
Os.8147.1.S1_a_at--215--1891Chr04:28857020..28857044 (25 bp)
ACGTACCACCGTAGAGGCTGGAAGT
LOC_Os04g48750
Os.8147.1.S1_a_at--456--6871Chr04:28857048..28857072 (25 bp)
GTATTGTATAACGTAGCCACGCAGA
LOC_Os04g48750
Os.8147.1.S1_a_at--106--10411Chr04:28857122..28857146 (25 bp)
TTATCAACATTCTTAAGCATCGGGA
LOC_Os04g48750
Target Sequence 
GGACCCAGTGGATAGGTGCTGTTATATTCATTTGGGGTTCCCTCCATCAGATCCGTTGCCATGCAATTCTTGGAACGTTG
CGTGAGCACAAAGATTCTGATGAATATGTAATTCCTTGTGGTGACTGGTTTAATCGAGTCTCTTGCCCTCATTACCTTGC
TGAACTAGTAATATATTTTGGCATGTTGGTTGCTAGTGGTGGAGAAGACATTCCAGTGTGGTTCCTGTTCGTATTTGTGA
TCACAAACCTGTCATTTGCAGCAGTAGAAACTCACAAGTGGTATCTTCAAAAGTTTGAAGACTATCCTCGCTCTCGCTAT
GCCATCATTCCATTTGTATGCTAGTGTCTACGAAATGGCTACATNATGCAAAGCTTATGTATTTGCACACAATTACGACA
TGTAACTTAGCTTGATGTAAATGTGATAACAATCATACTACGTACCACCGTAGAGGCTGGAAGTGTTGTATTGTATAACG
TAGCCACGCAGAANGTACCTGNGACACTTCATGCTGNGNGNTATGCTACACACTTGGATATTTATCAACATTCTTAAGCA
TCGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8147.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis