Browse Element(s) Details


Os.6655.1.S1_at

Description gb:AK119957.1
DB_XREF= gi:37989580
TID=Os.6655.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6655 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033061G23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-184-C12, full insert sequence.
FL= gb:AK119957.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4877011/11Ubiquitin fusion degradation protein UFD1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g48730Os.11503.1.S1_at11/114+28846801..28850115expressed protein
LOC_Os04g48740OsAffx.26529.1.S1_at11/114+28850518..28851057hypothetical protein
LOC_Os04g48750Os.8147.1.S1_a_at10/114+28852734..288571723-oxo-5-alpha-steroid 4-dehydrogenase family protein, putative, expressed
LOC_Os04g48760OsAffx.14332.1.S1_x_at11/114+28863453..28867523Leucine Rich Repeat family protein, expressed
LOC_Os04g48760Os.18364.1.S1_at11/114+28863453..28867523Leucine Rich Repeat family protein, expressed
LOC_Os04g48770Os.6655.2.S1_at11/114+28869728..28873880Ubiquitin fusion degradation protein UFD1 containing protein, expressed
LOC_Os04g48770Os.6655.1.S1_at11/114+28869728..28873880Ubiquitin fusion degradation protein UFD1 containing protein, expressed
LOC_Os04g48780Os.43764.1.A1_at6/114+28880118..28882370Transposase, putative
LOC_Os04g48780OsAffx.24046.2.S1_x_at3/114+28880118..28882370Transposase, putative
LOC_Os04g48780OsAffx.24046.7.S1_x_at3/114+28880118..28882370Transposase, putative
LOC_Os04g48780OsAffx.24046.3.S1_x_at1/114+28880118..28882370Transposase, putative
LOC_Os04g48790Os.25240.1.S1_at11/114+28886945..28890492rac GTPase activating protein 2, putative, expressed
LOC_Os04g48800Os.17990.1.S1_at11/114+28890997..28893724GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os04g48810NANA4+28894151..28894492hypothetical protein
LOC_Os04g48820Os.51199.1.S1_at11/114+28896478..28900555tatD-related deoxyribonuclease family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6655.1.S1_at--1047--1111Chr04:28872210..28872234 (25 bp)
AGTGCACTTTAGTTTTCAGATGAAC
LOC_Os04g48770
Os.6655.1.S1_at--743--10431Chr04:28872255..28872279 (25 bp)
TTATCCTCCTCTTCTATAGCAATTT
LOC_Os04g48770
Os.6655.1.S1_at--612--3131Chr04:28872275..28872299 (25 bp)
AATTTTTCAAGTGTGCTGCCATCTG
LOC_Os04g48770
Os.6655.1.S1_at--289--4431Chr04:28872292..28872316 (25 bp)
GCCATCTGGGAGCATGTACTCCACA
LOC_Os04g48770
Os.6655.1.S1_at--783--1971Chr04:28872309..28872333 (25 bp)
ACTCCACACCCTGAACTAGTATTTT
LOC_Os04g48770
Os.6655.1.S1_at--850--10051Chr04:28872325..28872349 (25 bp)
TAGTATTTTCATCTACTCCCATAGT
LOC_Os04g48770
Os.6655.1.S1_at--948--1991Chr04:28872339..28872363 (25 bp)
ACTCCCATAGTCCTGTATTTTGCAT
LOC_Os04g48770
Os.6655.1.S1_at--743--2331Chr04:28872434..28872458 (25 bp)
AAAGACGTCAAGCACTCTGTCCAGT
LOC_Os04g48770
Os.6655.1.S1_at--324--5331Chr04:28872464..28872488 (25 bp)
GAAGTGGCACTGTTCTGGATTGCTT
LOC_Os04g48770
Os.6655.1.S1_at--380--1691Chr04:28872504..28872528 (25 bp)
AGCCTTTCTGTCAACTTCTTGTATG
LOC_Os04g48770
Os.6655.1.S1_at--773--631Chr04:28872526..28872550 (25 bp)
ATGCTACTAGTTTGTTTACTGGGTT
LOC_Os04g48770
Target Sequence 
AGTGCACTTTAGTTTTCAGATGAACTTGTATTGAAAGGCTGAATTTTATCCTCCTCTTCTATAGCAATTTTTCAAGTGTG
CTGCCATCTGGGAGCATGTACTCCACACCCTGAACTAGTATTTTCATCTACTCCCATAGTCCTGTATTTTGCATAGTAAA
CTGCAACATAAGTTAAACAAAGAACAATAGAAGGAAAACTAGAACTGGAAGACATGCTTGAATCAAAGACGTCAAGCACT
CTGTCCAGTGGTGTGAAGTGGCACTGTTCTGGATTGCTTGGTTTTGGGGTTGACAGCCTTTCTGTCAACTTCTTGTATGC
TACTAGTTTGTTTACTGGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6655.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis