Browse Element(s) Details


Os.51199.1.S1_at

Description gb:AK065648.1
DB_XREF= gi:32975666
TID=Os.51199.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51199 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-038-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013035E21, full insert sequence.
FL= gb:AK104763.1 gb:AK061538.1 gb:AK065648.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4882011/11tatD-related deoxyribonuclease family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g48770Os.6655.2.S1_at11/114+28869728..28873880Ubiquitin fusion degradation protein UFD1 containing protein, expressed
LOC_Os04g48770Os.6655.1.S1_at11/114+28869728..28873880Ubiquitin fusion degradation protein UFD1 containing protein, expressed
LOC_Os04g48780Os.43764.1.A1_at6/114+28880118..28882370Transposase, putative
LOC_Os04g48780OsAffx.24046.2.S1_x_at3/114+28880118..28882370Transposase, putative
LOC_Os04g48780OsAffx.24046.7.S1_x_at3/114+28880118..28882370Transposase, putative
LOC_Os04g48780OsAffx.24046.3.S1_x_at1/114+28880118..28882370Transposase, putative
LOC_Os04g48790Os.25240.1.S1_at11/114+28886945..28890492rac GTPase activating protein 2, putative, expressed
LOC_Os04g48800Os.17990.1.S1_at11/114+28890997..28893724GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os04g48810NANA4+28894151..28894492hypothetical protein
LOC_Os04g48820Os.51199.1.S1_at11/114+28896478..28900555tatD-related deoxyribonuclease family protein, putative, expressed
LOC_Os04g48830Os.49117.1.S1_at11/114+28902762..28903995uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os04g48840OsAffx.26532.1.S1_at11/114+28905501..28907881Uncharacterised protein family containing protein, expressed
LOC_Os04g48840Os.6766.1.S1_s_at10/114+28905501..28907881Uncharacterised protein family containing protein, expressed
LOC_Os04g48850Os.49507.1.S1_at11/114+28912714..289155861-aminocyclopropane-1-carboxylate synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004536molecular_functiondeoxyribonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51199.1.S1_at--230--1191Chr04:28897514..28897538 (25 bp)
AGTACCTGTGGATAGCTCAAGTGCA
LOC_Os04g48820
Os.51199.1.S1_at--35--8291Chr04:28897454..28897478 (25 bp)
GGCATCTACCACTTCAAATGAGTCT
LOC_Os04g48820
Os.51199.1.S1_at--926--6091Chr04:28897435..28897459 (25 bp)
GAGTCTTTGAACCATCCATCTAATA
LOC_Os04g48820
Os.51199.1.S1_at--5--6931Chr04:28896904..28896928 (25 bp)
GTATGTCGCCTCACTGCTTGAAATA
LOC_Os04g48820
Os.51199.1.S1_at--14--5271Chr04:28896847..28896871 (25 bp)
GAATGCGACCAAGCTGTTCTCTTAT
LOC_Os04g48820
Os.51199.1.S1_at--141--4751Chr04:28896835..28896859 (25 bp)
GCTGTTCTCTTATCATGGATCCAAA
LOC_Os04g48820
Os.51199.1.S1_at--1142--5411Chr04:28896764..28896788 (25 bp)
GAACCATGTTGTTCCTCTGAAATTA
LOC_Os04g48820
Os.51199.1.S1_at--473--151Chr04:28896743..28896767 (25 bp)
ATTATGAACCCTGGTGCGTGCATTC
LOC_Os04g48820
Os.51199.1.S1_at--205--5511Chr04:28896711..28896735 (25 bp)
GAACACTACCCGTTATATTGTACTC
LOC_Os04g48820
Os.51199.1.S1_at--339--991Chr04:28896566..28896590 (25 bp)
AGGAGGCACTATCTTGGCAATGTTG
LOC_Os04g48820
Os.51199.1.S1_at--1067--5491Chr04:28896510..28896534 (25 bp)
GAACAGCAGGTCAGCAAGGTATCTA
LOC_Os04g48820
Target Sequence 
AGTACCTGTGGATAGCTCAAGTGCAGATAATGGAGAAAGTAAAAAAGATTCTAATTCACGGGCATCTACCACTTCAAATG
AGTCTTTGAACCATCCATCTAATATCCACATTGTTATGAAGTATGTCGCCTCACTGCTTGAAATATCAGAAATAGAACTT
GCTGAAGTGACATACAAGAATGCGACCAAGCTGTTCTCTTATCATGGATCCAAAGTTCACAATGAAGTGGAAGCTGTGTG
ATTGGGTGGGCATCCAATTTGAACCATGTTGTTCCTCTGAAATTATGAACCCTGGTGCGTGCATTCTGCCTCTGAACACT
ACCCGTTATATTGTACTCNCTCCTTTTTTTTTTGTTTGACGTTGGTTAGCTCAAAATTGAACTAACCAACATTAAACATT
TGGGGAAGGCGGTAGTATATTAGTAATTGCAACATAAAAGNAAGTGGTTATTTCGTTAAGGAGGCACTATCTTGGCAATG
TTGTCTAAGTGTGATTTTACATTTCTTGAGAGGAGAACAGCAGGTCAGCAAGGTATCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51199.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis