Browse Element(s) Details


Os.6766.1.S1_s_at

Description gb:AU182546
DB_XREF= gi:13896210
DB_XREF=AU182546
CLONE=E3883
TID=Os.6766.1
CNT=89
FEA=EST
TIER=Stack
STK=31
UG=Os.6766 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_564422.1 (A.thaliana) Expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4884010/11Uncharacterised protein family containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g48780Os.43764.1.A1_at6/114+28880118..28882370Transposase, putative
LOC_Os04g48780OsAffx.24046.2.S1_x_at3/114+28880118..28882370Transposase, putative
LOC_Os04g48780OsAffx.24046.7.S1_x_at3/114+28880118..28882370Transposase, putative
LOC_Os04g48780OsAffx.24046.3.S1_x_at1/114+28880118..28882370Transposase, putative
LOC_Os04g48790Os.25240.1.S1_at11/114+28886945..28890492rac GTPase activating protein 2, putative, expressed
LOC_Os04g48800Os.17990.1.S1_at11/114+28890997..28893724GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os04g48810NANA4+28894151..28894492hypothetical protein
LOC_Os04g48820Os.51199.1.S1_at11/114+28896478..28900555tatD-related deoxyribonuclease family protein, putative, expressed
LOC_Os04g48830Os.49117.1.S1_at11/114+28902762..28903995uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os04g48840OsAffx.26532.1.S1_at11/114+28905501..28907881Uncharacterised protein family containing protein, expressed
LOC_Os04g48840Os.6766.1.S1_s_at10/114+28905501..28907881Uncharacterised protein family containing protein, expressed
LOC_Os04g48850Os.49507.1.S1_at11/114+28912714..289155861-aminocyclopropane-1-carboxylate synthase, putative, expressed
LOC_Os04g48860Os.5357.1.S1_at11/114+28930098..28931792expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6766.1.S1_s_at--452--10111NONE
TATGGGCATTGCTTATTATCTGATG
NONE
Os.6766.1.S1_s_at--658--10391Chr04:28906043..28906067 (25 bp)
TTATCTGATGCAATCACCTGAAACA
LOC_Os04g48840
Os.6766.1.S1_s_at--1078--8811Chr04:28906001..28906025 (25 bp)
TGTTGGATTTGGATCTGCCTTTCTG
LOC_Os04g48840
Os.6766.1.S1_s_at--547--471Chr04:28905989..28906013 (25 bp)
ATCTGCCTTTCTGTTTGCCAGTGTT
LOC_Os04g48840
Os.6766.1.S1_s_at--918--2911Chr04:28905874..28905898 (25 bp)
AAGGCTGTACAATACCCGGAAACTG
LOC_Os04g48840
Os.6766.1.S1_s_at--298--5551Chr04:28905856..28905880 (25 bp)
GAAACTGGTGCCCTCTGGTCTTCTT
LOC_Os04g48840
Os.6766.1.S1_s_at--955--8591Chr04:28905841..28905865 (25 bp)
TGGTCTTCTTCTAGTTCTTTCGCTT
LOC_Os04g48840
Os.6766.1.S1_s_at--859--1211Chr04:28905829..28905853 (25 bp)
AGTTCTTTCGCTTGGTGCCTTGGGT
LOC_Os04g48840
Os.6766.1.S1_s_at--1068--4311Chr04:28905812..28905836 (25 bp)
CCTTGGGTGTCTTTTATTCTGCTTA
LOC_Os04g48840
Os.6766.1.S1_s_at--723--91Chr04:28905797..28905821 (25 bp)
ATTCTGCTTATATGCAAGACAAGGT
LOC_Os04g48840
Os.6766.1.S1_s_at--44--3131Chr04:28905744..28905768 (25 bp)
AATTTTGTACTAGCTGAACCTTCAT
LOC_Os04g48840
Target Sequence 
TATGGGCATTGCTTATTATCTGATGCAATCACCTGAAACAAAGGCGTTAGGTGACGCTGTTGGATTTGGATCTGCCTTTC
TGTTTGCCAGTGTTTTTGGTATAAGGCTGTACAATACCCGGAAACTGGTGCCCTCTGGTCTTCTTCTAGTTCTTTCGCTT
GGTGCCTTGGGTGTCTTTTATTCTGCTTATATGCAAGACAAGGTGTGAACAAATTCGATTTGGCAGTCGAAGAATTTTGT
ACTAGCTGAACCTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6766.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis