Browse Element(s) Details


Os.49507.1.S1_at

Description gb:AK064250.1
DB_XREF= gi:32974268
TID=Os.49507.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49507 (NCBI UniGene Cluster)
UG_TITLE=O.sativa (PAC40) mRNA for ACC synthase
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-C04, full insert sequence.
FL= gb:AK064250.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4885011/111-aminocyclopropane-1-carboxylate synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g48790Os.25240.1.S1_at11/114+28886945..28890492rac GTPase activating protein 2, putative, expressed
LOC_Os04g48800Os.17990.1.S1_at11/114+28890997..28893724GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os04g48810NANA4+28894151..28894492hypothetical protein
LOC_Os04g48820Os.51199.1.S1_at11/114+28896478..28900555tatD-related deoxyribonuclease family protein, putative, expressed
LOC_Os04g48830Os.49117.1.S1_at11/114+28902762..28903995uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os04g48840OsAffx.26532.1.S1_at11/114+28905501..28907881Uncharacterised protein family containing protein, expressed
LOC_Os04g48840Os.6766.1.S1_s_at10/114+28905501..28907881Uncharacterised protein family containing protein, expressed
LOC_Os04g48850Os.49507.1.S1_at11/114+28912714..289155861-aminocyclopropane-1-carboxylate synthase, putative, expressed
LOC_Os04g48860Os.5357.1.S1_at11/114+28930098..28931792expressed protein
LOC_Os04g48870OsAffx.26533.1.S1_at11/114+28933894..28934866expressed protein
LOC_Os04g48870Os.24786.1.S1_s_at11/114+28933894..28934866expressed protein
LOC_Os04g48880Os.8569.1.S1_at11/114+28938119..28940187beta-carotene hydroxylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008631biological_processinduction of apoptosis by oxidative stress
GO:0009605biological_processresponse to external stimulus
GO:0009612biological_processresponse to mechanical stimulus
GO:0009693biological_processethylene biosynthesis
GO:0009723biological_processresponse to ethylene stimulus
GO:0009733biological_processresponse to auxin stimulus
GO:0016847molecular_function1-aminocyclopropane-1-carboxylate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49507.1.S1_at--1035--811Chr04:28913227..28913251 (25 bp)
ATGGTTCGCGCCACCAGCTGATTAA
LOC_Os04g48850
Os.49507.1.S1_at--244--1131Chr04:28913196..28913220 (25 bp)
AGTGCACTTGCTCTGCTAATGCTGC
LOC_Os04g48850
Os.49507.1.S1_at--267--4451Chr04:28913171..28913195 (25 bp)
GCCTTACTACGTCGACTACATTTTC
LOC_Os04g48850
Os.49507.1.S1_at--653--8791Chr04:28913093..28913117 (25 bp)
TGTTCTTTCCGATGCAGGTACGTGT
LOC_Os04g48850
Os.49507.1.S1_at--95--5551Chr04:28913057..28913081 (25 bp)
GAAACTAGGCTACACGTGCACGGCA
LOC_Os04g48850
Os.49507.1.S1_at--836--5091Chr04:28913040..28913064 (25 bp)
GCACGGCACCGTACATGTAGCTTGG
LOC_Os04g48850
Os.49507.1.S1_at--69--1911Chr04:28913002..28913026 (25 bp)
ACGTGCGTTAGTGCGTACAGGCGTC
LOC_Os04g48850
Os.49507.1.S1_at--915--4151Chr04:28912978..28913002 (25 bp)
CGCCGCGTCGGGTGTACATAGGTAA
LOC_Os04g48850
Os.49507.1.S1_at--1046--3951Chr04:28912918..28912942 (25 bp)
CGGAGTCCTCGATTCTTTTGTGTAT
LOC_Os04g48850
Os.49507.1.S1_at--969--4191Chr04:28912839..28912863 (25 bp)
CCCGATCGGCTCTTGTAAACTGTAA
LOC_Os04g48850
Os.49507.1.S1_at--445--1031Chr04:28912744..28912768 (25 bp)
AGGTCTTCAACGTGCATCTTGCATG
LOC_Os04g48850
Target Sequence 
ATGGTTCGCGCCACCAGCTGATTAAGCCAGCAGTGCACTTGCTCTGCTAATGCTGCGCCTTACTACGTCGACTACATTTT
CATAACCATTTTTTTCTCGATCGCATCGTCGCACGGCGGCACGGGGCCGTATGGTGTTCTTTCCGATGCAGGTACGTGTG
ATCGTTTGTGGAAACTAGGCTACACGTGCACGGCACCGTACATGTAGCTTGGCTTTTTTGTAGAGACGTGCGTTAGTGCG
TACAGGCGTCGCCGCGTCGGGTGTACATAGGTAATTTTAGTAGCGTGTGTAACAGGGGTATCGGAGATTCGGAGTCCTCG
ATTCTTTTGTGTATGGTTTGGTTAATTCAGATGGCAAGGAATAATGATCGGATTAAGGCGTTAAGCCCCCCGATCGGCTC
TTGTAAACTGTAAAGTGTAAACANGTTACACTTACAATAAGGCTTAGGATTGAATCGATCCGGATATATTGAATCTGTAT
AGCAGGTCTTCAACGTGCATCTTGCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49507.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis