Browse Element(s) Details


OsAffx.26532.1.S1_at

Description tigr:9632.m04737
TID=OsAffx.26532.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to protein kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4884011/11Uncharacterised protein family containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g48780Os.43764.1.A1_at6/114+28880118..28882370Transposase, putative
LOC_Os04g48780OsAffx.24046.2.S1_x_at3/114+28880118..28882370Transposase, putative
LOC_Os04g48780OsAffx.24046.7.S1_x_at3/114+28880118..28882370Transposase, putative
LOC_Os04g48780OsAffx.24046.3.S1_x_at1/114+28880118..28882370Transposase, putative
LOC_Os04g48790Os.25240.1.S1_at11/114+28886945..28890492rac GTPase activating protein 2, putative, expressed
LOC_Os04g48800Os.17990.1.S1_at11/114+28890997..28893724GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os04g48810NANA4+28894151..28894492hypothetical protein
LOC_Os04g48820Os.51199.1.S1_at11/114+28896478..28900555tatD-related deoxyribonuclease family protein, putative, expressed
LOC_Os04g48830Os.49117.1.S1_at11/114+28902762..28903995uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os04g48840OsAffx.26532.1.S1_at11/114+28905501..28907881Uncharacterised protein family containing protein, expressed
LOC_Os04g48840Os.6766.1.S1_s_at10/114+28905501..28907881Uncharacterised protein family containing protein, expressed
LOC_Os04g48850Os.49507.1.S1_at11/114+28912714..289155861-aminocyclopropane-1-carboxylate synthase, putative, expressed
LOC_Os04g48860Os.5357.1.S1_at11/114+28930098..28931792expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26532.1.S1_at--798--7511Chr04:28907418..28907442 (25 bp)
GTGGACGGCGTATATTTCCTACATT
LOC_Os04g48840
OsAffx.26532.1.S1_at--645--9452Chr06:2038688..2038707 (20 bp)
TCTGAATTTCCCTTTTGTGTTTGTT
NONE
OsAffx.26532.1.S1_at--906--6851Chr04:28907374..28907398 (25 bp)
GTTTGTTTACACTTTAGAGCAGCCT
LOC_Os04g48840
OsAffx.26532.1.S1_at--953--1351Chr04:28907359..28907383 (25 bp)
AGAGCAGCCTAGCTTTCAGGTTAGA
LOC_Os04g48840
OsAffx.26532.1.S1_at--732--10471Chr04:28907282..28907306 (25 bp)
TTACACGGCTGTAGCAATTATGCTT
LOC_Os04g48840
OsAffx.26532.1.S1_at--1156--10111Chr04:28907264..28907288 (25 bp)
TATGCTTAGACCAAACTGCTATTTT
LOC_Os04g48840
OsAffx.26532.1.S1_at--90--1171Chr04:28907197..28907221 (25 bp)
AGTCATGCATTCACAACTCTACACA
LOC_Os04g48840
OsAffx.26532.1.S1_at--276--9851Chr04:28907178..28907202 (25 bp)
TACACACATGTTTCCCCAAAATTGC
LOC_Os04g48840
OsAffx.26532.1.S1_at--1002--7171Chr04:28907069..28907093 (25 bp)
GTCTGGAATTTTTGGTGTACTACTT
LOC_Os04g48840
OsAffx.26532.1.S1_at--243--3251Chr04:28906994..28907018 (25 bp)
CAACCTTCAAATCTTAGTCCAACCA
LOC_Os04g48840
OsAffx.26532.1.S1_at--186--7031Chr04:28906978..28907002 (25 bp)
GTCCAACCAGTTGTTTTGAATCAGC
LOC_Os04g48840
Target Sequence 
GTGGACGGCGTATATTTCCTACATTTTCTGAATTTCCCTTTTGTGTTTGTTTACACTTTAGAGCAGCCTAGCTTTCAGGT
TAGATATCAAATGCTTAAGGGAATTTCTTTTGTTATGATTCTTGATATACAATTGATTACACGGCTGTAGCAATTATGCT
TAGACCAAACTGCTATTTTTTTTAACAAAGTATAACTTTCGGGTCGGTGAGGGAAAACTAAAGTCATGCATTCACAACTC
TACACACATGTTTCCCCAAAATTGCAGAGTTTTATTGGGCTGTTGGGGGGACAGAATAGGATTCTTGTAAGTTAGAACTC
GGAACATTGGAAGAACTTACAGCAAATATGTCTGGAATTTTTGGTGTACTACTTGTAGTTGGAACAGAAGATGGAAAGGG
ACACAATTTGCTAGGTGCAGGAAACAACCTTCAAATCTTAGTCCAACCAGTTGTTTTGAATCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26532.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis