Browse Element(s) Details


Os.25240.1.S1_at

Description gb:AK101984.1
DB_XREF= gi:32987193
TID=Os.25240.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25240 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033078K23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033078K23, full insert sequence.
FL= gb:AK101984.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4879011/11rac GTPase activating protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g48760OsAffx.14332.1.S1_x_at11/114+28863453..28867523Leucine Rich Repeat family protein, expressed
LOC_Os04g48760Os.18364.1.S1_at11/114+28863453..28867523Leucine Rich Repeat family protein, expressed
LOC_Os04g48770Os.6655.2.S1_at11/114+28869728..28873880Ubiquitin fusion degradation protein UFD1 containing protein, expressed
LOC_Os04g48770Os.6655.1.S1_at11/114+28869728..28873880Ubiquitin fusion degradation protein UFD1 containing protein, expressed
LOC_Os04g48780Os.43764.1.A1_at6/114+28880118..28882370Transposase, putative
LOC_Os04g48780OsAffx.24046.2.S1_x_at3/114+28880118..28882370Transposase, putative
LOC_Os04g48780OsAffx.24046.7.S1_x_at3/114+28880118..28882370Transposase, putative
LOC_Os04g48780OsAffx.24046.3.S1_x_at1/114+28880118..28882370Transposase, putative
LOC_Os04g48790Os.25240.1.S1_at11/114+28886945..28890492rac GTPase activating protein 2, putative, expressed
LOC_Os04g48800Os.17990.1.S1_at11/114+28890997..28893724GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os04g48810NANA4+28894151..28894492hypothetical protein
LOC_Os04g48820Os.51199.1.S1_at11/114+28896478..28900555tatD-related deoxyribonuclease family protein, putative, expressed
LOC_Os04g48830Os.49117.1.S1_at11/114+28902762..28903995uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os04g48840OsAffx.26532.1.S1_at11/114+28905501..28907881Uncharacterised protein family containing protein, expressed
LOC_Os04g48840Os.6766.1.S1_s_at10/114+28905501..28907881Uncharacterised protein family containing protein, expressed
LOC_Os04g48850Os.49507.1.S1_at11/114+28912714..289155861-aminocyclopropane-1-carboxylate synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030675molecular_functionRac GTPase activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25240.1.S1_at--200--5311Chr04:28889970..28889994 (25 bp)
GAAGGACCGGAGAAGCATGACATAG
LOC_Os04g48790
Os.25240.1.S1_at--224--8831Chr04:28890035..28890059 (25 bp)
TGATTCGAATAACCAAGTCAGCAGC
LOC_Os04g48790
Os.25240.1.S1_at--1059--2951Chr04:28890084..28890108 (25 bp)
AATGTGGAAGGCCTGTTCGACAAAT
LOC_Os04g48790
Os.25240.1.S1_at--500--5331Chr04:28890176..28890200 (25 bp)
GAAGTCTGCAGACGTTGTGGTCTTT
LOC_Os04g48790
Os.25240.1.S1_at--248--6631Chr04:28890189..28890213 (25 bp)
GTTGTGGTCTTTGATGCTCCTGGAG
LOC_Os04g48790
Os.25240.1.S1_at--1133--8651Chr04:28890265..28890289 (25 bp)
TGTGGATGTAATGCTATCTTTTCTC
LOC_Os04g48790
Os.25240.1.S1_at--361--10591Chr04:28890285..28890309 (25 bp)
TTCTCTGTCTTGTTTGTGTGAGCAG
LOC_Os04g48790
Os.25240.1.S1_at--486--7471Chr04:28890351..28890375 (25 bp)
GTGTGCATTATAACCATTTACTTCT
LOC_Os04g48790
Os.25240.1.S1_at--883--2051Chr04:28890370..28890394 (25 bp)
ACTTCTGACGAAAGCGTCTGCCTGT
LOC_Os04g48790
Os.25240.1.S1_at--480--9491Chr04:28890386..28890410 (25 bp)
TCTGCCTGTGGCTGCTACAAGTAAA
LOC_Os04g48790
Os.25240.1.S1_at--814--2651Chr04:28890414..28890438 (25 bp)
AAGCCAGCTGAATTCTGGCTCAGTA
LOC_Os04g48790
Target Sequence 
GAAGGACCGGAGAAGCATGACATAGGCCNACCGAAGCGCCATAGCGAAGCNTCTCCTCNTGGTAATGATTCGAATAACCA
AGTCAGCAGCNCTGGAAAAGAATTTGGCAACAGAAATGTGGAAGGCCTGTTCGACAAATTNAGTTTTAGGAAAGGTGTCG
AGAGGCTTTGCAGGCANCCTGTGTTCCAGTTGAGTAGGTCCATGAAGAAGTCTGCAGACGTTGTGGTCTTTGATGCTCCT
GGAGAAGCAAGACAAGCTTGGGGTTTGATATGATAATGGTTGTATATGTAGTTGGTGTGGATGTAATGCTATCTTTTCTC
TGTCTTGTTTGTGTGAGCAGAAGCGATTAGCATGTTAGATTTATAGGTGCTGCAGGTTGTTGTGTGCATTATAACCATTT
ACTTCTGACGAAAGCGTCTGCCTGTGGCTGCTACAAGTAAACGAAAGCCAGCTGAATTCTGGCTCAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25240.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis