Browse Element(s) Details


Os.18364.1.S1_at

Description gb:AK102667.1
DB_XREF= gi:32987876
TID=Os.18364.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18364 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033101N13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033101N13, full insert sequence.
FL= gb:AK102667.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4876011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g48730Os.11503.1.S1_at11/114+28846801..28850115expressed protein
LOC_Os04g48740OsAffx.26529.1.S1_at11/114+28850518..28851057hypothetical protein
LOC_Os04g48750Os.8147.1.S1_a_at10/114+28852734..288571723-oxo-5-alpha-steroid 4-dehydrogenase family protein, putative, expressed
LOC_Os04g48760OsAffx.14332.1.S1_x_at11/114+28863453..28867523Leucine Rich Repeat family protein, expressed
LOC_Os04g48760Os.18364.1.S1_at11/114+28863453..28867523Leucine Rich Repeat family protein, expressed
LOC_Os04g48770Os.6655.2.S1_at11/114+28869728..28873880Ubiquitin fusion degradation protein UFD1 containing protein, expressed
LOC_Os04g48770Os.6655.1.S1_at11/114+28869728..28873880Ubiquitin fusion degradation protein UFD1 containing protein, expressed
LOC_Os04g48780Os.43764.1.A1_at6/114+28880118..28882370Transposase, putative
LOC_Os04g48780OsAffx.24046.2.S1_x_at3/114+28880118..28882370Transposase, putative
LOC_Os04g48780OsAffx.24046.7.S1_x_at3/114+28880118..28882370Transposase, putative
LOC_Os04g48780OsAffx.24046.3.S1_x_at1/114+28880118..28882370Transposase, putative
LOC_Os04g48790Os.25240.1.S1_at11/114+28886945..28890492rac GTPase activating protein 2, putative, expressed
LOC_Os04g48800Os.17990.1.S1_at11/114+28890997..28893724GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009556biological_processmicrosporogenesis
GO:0010234biological_processtapetal cell fate specification
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18364.1.S1_at--135--551Chr04:28866979..28867003 (25 bp)
ATCCATTTTCCGCTAATTCTTTCTT
LOC_Os04g48760
Os.18364.1.S1_at--827--6551Chr04:28867014..28867038 (25 bp)
GATTAGTCTTAGCTTCATCCAGCCG
LOC_Os04g48760
Os.18364.1.S1_at--1110--2711Chr04:28867093..28867117 (25 bp)
AAGCAGACCAGAGGCTTGGCCCCAA
LOC_Os04g48760
Os.18364.1.S1_at--9--5571Chr04:28867122..28867146 (25 bp)
GAAAGTAGCCGTTGAGCCCCTTCCT
LOC_Os04g48760
Os.18364.1.S1_at--334--4311Chr04:28867140..28867164 (25 bp)
CCTTCCTAATCTCGCGGTTAGTGGA
LOC_Os04g48760
Os.18364.1.S1_at--648--9671Chr04:28867192..28867216 (25 bp)
TCACCATGTGGACTGATGCTTGCGC
LOC_Os04g48760
Os.18364.1.S1_at--842--2571Chr04:28867286..28867310 (25 bp)
AACGGCTACTGATGCTCCATCTGTT
LOC_Os04g48760
Os.18364.1.S1_at--477--6731Chr04:28867308..28867332 (25 bp)
GTTCTTGGCTGCTCTGTACCCTGTA
LOC_Os04g48760
Os.18364.1.S1_at--709--8291Chr04:28867384..28867408 (25 bp)
GGCTTCTTCGGATCTTGTCTTTTAT
LOC_Os04g48760
Os.18364.1.S1_at--324--1731Chr04:28867424..28867448 (25 bp)
ACCATGGGCTTAGATCTTTTGTAAT
LOC_Os04g48760
Os.18364.1.S1_at--672--3551Chr04:28867460..28867484 (25 bp)
CATCTTGTCTGTATTTTGTTATCCC
LOC_Os04g48760
Target Sequence 
ATCCATTTTCCGCTAATTCTTTCTTCTTTAGTTCAGATTAGTCTTAGCTTCATCCAGCCGCGGGGTCAAAACTGACATNT
GAGCCCGGGAGCAAGAACACCTGCATTTCCCGCCAAGCAGACCAGAGGCTTGGCCCCAAGTGGGAAAGTAGCCGTTGAGC
CCCTTCCTAATCTCGCGGTTAGTGGAGNTGTCAGTGGCTGCCGGGGAAGCAAATCACCATGTGGACTGATGCTTGCGCGG
CATGTTGCGGAGGAGGAGNTTGGTGGTGGNGGCGTCGTGGACTCGCGCATGTGGGGTTCCCCATCGCAACGGCTACTGAT
GCTCCATCTGTTCTTGGCTGCTCTGTACCCTGTACTCCCTTCTCTCTCTCTCTAGGAAATTGATTTCGTGTAGGGGGGCC
TGCTTGGCTTCTTCGGATCTTGTCTTTTATTAATCTCCATTTTTTACCATGGGCTTAGATCTTTTGTAATGTTGTGATGT
ACATCTTGTCTGTATTTTGTTATCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18364.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis