Browse Element(s) Details


Os.11503.1.S1_at

Description gb:AK102575.1
DB_XREF= gi:32987784
TID=Os.11503.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11503 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033097O09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033097O09, full insert sequence.
FL= gb:AK102575.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4873011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g48710Os.8148.1.S1_a_at11/114+28823861..28827816expressed protein
LOC_Os04g48720OsAffx.26528.1.S1_at7/114+28836918..28838221hypothetical protein
LOC_Os04g48730Os.11503.1.S1_at11/114+28846801..28850115expressed protein
LOC_Os04g48740OsAffx.26529.1.S1_at11/114+28850518..28851057hypothetical protein
LOC_Os04g48750Os.8147.1.S1_a_at10/114+28852734..288571723-oxo-5-alpha-steroid 4-dehydrogenase family protein, putative, expressed
LOC_Os04g48760OsAffx.14332.1.S1_x_at11/114+28863453..28867523Leucine Rich Repeat family protein, expressed
LOC_Os04g48760Os.18364.1.S1_at11/114+28863453..28867523Leucine Rich Repeat family protein, expressed
LOC_Os04g48770Os.6655.2.S1_at11/114+28869728..28873880Ubiquitin fusion degradation protein UFD1 containing protein, expressed
LOC_Os04g48770Os.6655.1.S1_at11/114+28869728..28873880Ubiquitin fusion degradation protein UFD1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11503.1.S1_at--77--10391Chr04:28849530..28849554 (25 bp)
TTTTCGCAGAAGTACGTTGGGACAT
LOC_Os04g48730
Os.11503.1.S1_at--397--1191Chr04:28849570..28849594 (25 bp)
AGTTTGCATGGTCTCCTTAGAAGGG
LOC_Os04g48730
Os.11503.1.S1_at--1052--8591Chr04:28849691..28849714 (24 bp)
TGGTGGTTACCGTGACATTGAAGTC
LOC_Os04g48730
Os.11503.1.S1_at--109--7491Chr04:28849736..28849760 (25 bp)
GTGGGTGTTCCCGTCGATAAGAATC
LOC_Os04g48730
Os.11503.1.S1_at--333--5251Chr04:28849756..28849780 (25 bp)
GAATCATTGCTATGCTTGTGGCGAT
LOC_Os04g48730
Os.11503.1.S1_at--1145--7531Chr04:28849773..28849797 (25 bp)
GTGGCGATGGACTCAAGCATCCAGA
LOC_Os04g48730
Os.11503.1.S1_at--489--8891Chr04:28849813..28849837 (25 bp)
TGAGAGTGGTCATATCGCTTCCGGC
LOC_Os04g48730
Os.11503.1.S1_at--255--10151Chr04:28849825..28849849 (25 bp)
TATCGCTTCCGGCAGTTATTATGAC
LOC_Os04g48730
Os.11503.1.S1_at--1093--3951Chr04:28849941..28849965 (25 bp)
CGGAGTATACTCACCATTCTACTTT
LOC_Os04g48730
Os.11503.1.S1_at--917--7391Chr04:28850007..28850031 (25 bp)
GTGATACACCCGAAGACGTTATTAT
LOC_Os04g48730
Os.11503.1.S1_at--728--2891Chr04:28850058..28850082 (25 bp)
AAGGTGGCAATCCACTCCTGGGAGT
LOC_Os04g48730
Target Sequence 
TTTTCGCAGAAGTACGTTGGGACATTGATTCTTATGTGCCAGTTTGCATGGTCTCCTTAGAAGGGAAGGAAAAATCTGGT
GGTTACCGTGACATTGAAGTCGACTATCCAAGAGGAGGTTTTGTGGGTGTTCCCGTCGATAAGAATCATTGCTATGCTTG
TGGCGATGGACTCAAGCATCCAGAGGATGGAACNTTATATGAGAGTGGTCATATCGCTTCCGGCAGTTATTATGACTAGC
AGTTTTATTGAAATTGCATTTTTAGAACTTTATTTAGCTAGACTAGAAGTGTGCAATCCTTTATATCTATGCTAAACTAA
ATTAGTACGGAGTATACTCACCATTCTACTTTGTATACATCTTGTTTGATTTGGGTTGAACTCCGAGTTGTATGTGATAC
ACCCGAAGACGTTATTATCGTTGCAAATATTGAAAAAGTCATAGAAGGTGGCAATCCACTCCTGGGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11503.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis