Browse Element(s) Details


OsAffx.26528.1.S1_at

Description tigr:9632.m04723
TID=OsAffx.26528.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g487207/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g48700OsAffx.14331.1.S1_at10/114+28810526..28817077H/ACA ribonucleoprotein complex subunit 4, putative
LOC_Os04g48700Os.13464.1.S1_at1/114+28810526..28817077H/ACA ribonucleoprotein complex subunit 4, putative
LOC_Os04g48710Os.8148.1.S1_a_at11/114+28823861..28827816expressed protein
LOC_Os04g48720OsAffx.26528.1.S1_at7/114+28836918..28838221hypothetical protein
LOC_Os04g48730Os.11503.1.S1_at11/114+28846801..28850115expressed protein
LOC_Os04g48740OsAffx.26529.1.S1_at11/114+28850518..28851057hypothetical protein
LOC_Os04g48750Os.8147.1.S1_a_at10/114+28852734..288571723-oxo-5-alpha-steroid 4-dehydrogenase family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26528.1.S1_at--768--8351Chr04:28836951..28836975 (25 bp)
GGCGGCTCCAACTCGATGCGACGGC
LOC_Os04g48720
OsAffx.26528.1.S1_at--808--4591NONE
GCGACGGCGCCCATGGATTAAGGAC
NONE
OsAffx.26528.1.S1_at--917--5731NONE
GACGGCGCCCATGGATTAAGGACAA
NONE
OsAffx.26528.1.S1_at--157--3931NONE
CGGCGCCCATGGATTAAGGACAATA
NONE
OsAffx.26528.1.S1_at--120--4571NONE
GCGCCCATGGATTAAGGACAATATT
NONE
OsAffx.26528.1.S1_at--861--10811Chr04:28837651..28837672 (22 bp)
TTGGACCAATAATTCATAAAAGATG
LOC_Os04g48720
OsAffx.26528.1.S1_at--352--2331Chr04:28837911..28837932 (22 bp)
AAAGATGTTACAAGTTACCAGTGAC
LOC_Os04g48720
OsAffx.26528.1.S1_at--840--2211Chr04:28837917..28837941 (25 bp)
ACAAGTTACCAGTGACAACGTCGCG
LOC_Os04g48720
OsAffx.26528.1.S1_at--266--2831Chr04:28837919..28837943 (25 bp)
AAGTTACCAGTGACAACGTCGCGGA
LOC_Os04g48720
OsAffx.26528.1.S1_at--1018--6771Chr04:28837921..28837945 (25 bp)
GTTACCAGTGACAACGTCGCGGAAG
LOC_Os04g48720
OsAffx.26528.1.S1_at--474--9971Chr04:28837923..28837947 (25 bp)
TACCAGTGACAACGTCGCGGAAGAA
LOC_Os04g48720
Target Sequence 
GGCGGCTCCAACTCGATGCGACGGCGCCCATGGATTAAGGACAATATTGGAGGATTTCTTGGACCAATAATTCATAAAAG
ATGTTACAAGTTACCAGTGACAACGTCGCGGAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26528.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis